PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.2057s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30376.1 Da PI: 5.8495 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++lv +++++G +W++ +++ g+ R++k+c++rw++yl Araha.2057s0001.1.p 14 KGEWTAEEDQKLVAYINEHGICDWRSLPKRAGLQRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e ++++++ lG++ W++Ia+ m+ +Rt++++k++w++ Araha.2057s0001.1.p 67 RGKFTPQEEEDIIQLHAVLGNR-WAAIAKQMQ-NRTDNDIKNHWNSC 111 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.701 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.97E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.123 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.05E-10 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRTTWFDDD GMKKGEWTAE EDQKLVAYIN EHGICDWRSL PKRAGLQRCG KSCRLRWLNY 60 LRPGIRRGKF TPQEEEDIIQ LHAVLGNRWA AIAKQMQNRT DNDIKNHWNS CLKKRLSRKG 120 IDPMTHEPII KHLTIKTTNA DCSSSSTTTS PSLESPHSSG SARLLNKLAA GISSRQHSLD 180 RIKYIFSNPI IESSDQVKEE EEKEEGEEKD SMMDQKIDGS EGDDIQIWDV EEVRRLMEIG 240 AMEYEMTSYD AVMYDSTHIL DHLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.2057s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065166 | 0.0 | AY065166.1 Arabidopsis thaliana Putative MYB47 transcription factor (F6a14.18) mRNA, complete cds. | |||
GenBank | AY114579 | 0.0 | AY114579.1 Arabidopsis thaliana Putative MYB47 transcription factor (At1g18710) mRNA, complete cds. | |||
GenBank | AY519556 | 0.0 | AY519556.1 Arabidopsis thaliana MYB transcription factor (At1g18710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002890295.1 | 1e-175 | transcription factor MYB34 | ||||
Swissprot | O64399 | 2e-62 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | D7KH58 | 1e-174 | D7KH58_ARALL; AtMYB47 | ||||
STRING | fgenesh1_pg.C_scaffold_1001691 | 1e-174 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-152 | myb domain protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Araha.2057s0001.1.p |