PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20468s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 684aa    MW: 76408.4 Da    PI: 6.9236
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20468s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-213893156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Araha.20468s0006.1.p 38 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 93
                          7999************************************************9877 PP
2START231.13e-721954221206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                           e+a++aa el+k+a+++ep+W +s+    e++n+de+l++f+++++      +++ea+r+ g+v+m++++l ++++d++ qW+e++a  
  Araha.20468s0006.1.p 195 EIANRAALELQKMATSGEPLWLRSVetgrEILNYDEYLKEFPQAQAssfpgrKTIEASRDAGIVFMDAHKLAQSFMDVG-QWKEMFAcl 282
                           57899**************************************999*********************************.********* PP

                           ..EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEE CS
                 START  78 ..kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgilie 155
                             ka+t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++e++++e ++s+ ++++lpSg++ie
  Araha.20468s0006.1.p 283 isKAATVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSVEDCNTEkEASLLKCRKLPSGCIIE 371
                           ***************************************************************************************** PP

                           EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           ++sngh kvtwveh d+++++++ l+rslv++gla+ga++wvatlq +ce+
  Araha.20468s0006.1.p 372 DTSNGHAKVTWVEHLDVSASTVQPLFRSLVNTGLAFGARHWVATLQLHCER 422
                           *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-222389IPR009057Homeodomain-like
SuperFamilySSF466892.67E-193296IPR009057Homeodomain-like
PROSITE profilePS5007117.8153595IPR001356Homeobox domain
SMARTSM003899.6E-183799IPR001356Homeobox domain
PfamPF000462.4E-183893IPR001356Homeobox domain
CDDcd000862.38E-164293No hitNo description
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348186425IPR002913START domain
SuperFamilySSF559611.21E-30189422No hitNo description
CDDcd088754.19E-109190421No hitNo description
SMARTSM002344.5E-82195422IPR002913START domain
PfamPF018525.3E-66195422IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-7249421IPR023393START-like domain
SuperFamilySSF559611.15E-15451668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MSSENSGPTR SRSEEDLEGE DHEDEEEEEE NKGNKRKRKK YHRHTTDQIR HMEALFKETP  60
HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKAELEK LREENKVMRE  120
SFSKANSSCP NCGGGPDDLH LENSKLKAEL DKLRAALGRT PYPLQASCSD DQEHRLGSLD  180
FYTGVFALEK SRIAEIANRA ALELQKMATS GEPLWLRSVE TGREILNYDE YLKEFPQAQA  240
SSFPGRKTIE ASRDAGIVFM DAHKLAQSFM DVGQWKEMFA CLISKAATVD VIRQGEGPSR  300
IDGAIQLMFG EMQLLTPVVP TREVYFVRSC RQLSPEKWAI VDVSVSVEDC NTEKEASLLK  360
CRKLPSGCII EDTSNGHAKV TWVEHLDVSA STVQPLFRSL VNTGLAFGAR HWVATLQLHC  420
ERLVFFMATN VPTKDSLGVT TLAGRKSVLK MAQRMTQSFY RAIAASSYHQ WTKITTKTGQ  480
DMRVSSRKNL HDPGEPTGVI VCASSSLWLP VSPTLLFDFF RDEARRHEWD ALSNGAHVQS  540
IASLSKGQDR GNSVAIQTVK SREKSIWVLQ DSSTNSYESV VVYAPVDINT TQLVLAGHDP  600
SNIQILPSGF SIIPDGVESR PLVITSTQDD RNSQGGSLLT LALQTLINPS PAAKLNMESV  660
ESVTSLVSVT LHNIKRSLQI EDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20468s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602940.0AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
GenBankBT0019560.0BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891640.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1P8AMA10.0A0A1P8AMA1_ARATH; HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
STRINGAT1G79840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]