PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.20365s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 284aa MW: 32061 Da PI: 4.7705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67 | 3.5e-21 | 143 | 193 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAa+a+++a+ +l+g Araha.20365s0001.1.p 143 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAARAYDEAAFRLRG 193 8********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.45E-33 | 142 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-33 | 142 | 202 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-15 | 143 | 193 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 143 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 143 | 203 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.434 | 143 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 144 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 167 | 183 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MATPNEVSAL WFIEKHLLDE TSPVATDPWM KHEPSATESS SDSSSMLFQS SSSSLCKPEI 60 IDLDTPRFMD FISTPFDFDS EISVSDFDFK ISNQNQVEPE IQSQIRKPPL KISLPAKTEW 120 IQFAAENTKP EVTKPVSEEE KKHYRGVRQR PWGKFAAEIR DPNKRGSRVW LGTFDTAIEA 180 ARAYDEAAFR LRGSKAILNF PLEVGKWKPR ADESEKKRKR DDDDDAEKVT VVEKVLKTEQ 240 SVDVNGGETF PLCDWDLTGF LNFPLLSPLS PHPSFGYSQL TVV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-31 | 142 | 204 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-31 | 142 | 204 | 4 | 66 | ATERF1 |
3gcc_A | 3e-31 | 142 | 204 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.20365s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB008107 | 0.0 | AB008107.1 Arabidopsis thaliana AtERF-5 mRNA for ethylene responsive element binding factor 5, complete cds. | |||
GenBank | AB018117 | 0.0 | AB018117.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQL5. | |||
GenBank | AF385709 | 0.0 | AF385709.1 Arabidopsis thaliana AT5g47230/MQL5_9 mRNA, complete cds. | |||
GenBank | AK117568 | 0.0 | AK117568.1 Arabidopsis thaliana At5g47230 mRNA for putative ethylene responsive element binding factor 5 (ATERF5), complete cds, clone: RAFL17-21-N19. | |||
GenBank | AY078014 | 0.0 | AY078014.1 Arabidopsis thaliana AT5g47230/MQL5_9 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_568679.1 | 1e-171 | ethylene responsive element binding factor 5 | ||||
Swissprot | O80341 | 1e-172 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A178UKK9 | 1e-170 | A0A178UKK9_ARATH; ERF5 | ||||
STRING | AT5G47230.1 | 1e-171 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-122 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.20365s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|