PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19926s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 736aa    MW: 80805.1 Da    PI: 5.9853
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19926s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.1e-2169124156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Araha.19926s0004.1.p  69 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 124
                           688999***********************************************999 PP
2START213.11e-662574761206
                           HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
                 START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                           ela++a++elvk+a +eep+Wvks     +++n+de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +a
  Araha.19926s0004.1.p 257 ELALTAMDELVKLAHSEEPLWVKSLdgerDELNQDEYMRTFSSTKPtgLATEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRA 344
                           5899*************************************9999999***************************.************* PP

                           EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                 START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                           +t++vissg      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+++ ++ +  ++v+R  +lpSg++++++sng+
  Araha.19926s0004.1.p 345 TTTDVISSGmagtinGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIEPVRESSGGAPVIR--RLPSGCVVQDMSNGY 431
                           ****************************************************************99******..*************** PP

                           EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                           skvtwveh++++++++h+l+r+l++sgl +g ++w+atlqrqc++
  Araha.19926s0004.1.p 432 SKVTWVEHAEYDENHIHQLYRPLLRSGLGFGSQRWLATLQRQCQC 476
                           *******************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-2056126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-2257126IPR009057Homeodomain-like
PROSITE profilePS5007117.29766126IPR001356Homeobox domain
SMARTSM003899.5E-1867130IPR001356Homeobox domain
CDDcd000862.83E-1868126No hitNo description
PfamPF000461.8E-1869124IPR001356Homeobox domain
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PROSITE profilePS5084842.27248479IPR002913START domain
SuperFamilySSF559612.84E-29252476No hitNo description
CDDcd088751.79E-112252475No hitNo description
PfamPF018524.3E-60257476IPR002913START domain
SMARTSM002341.4E-40257476IPR002913START domain
SuperFamilySSF559616.83E-21495720No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MFGQEQPERG TNRGEASMRN NNVGGGDNFD GSSVNRRSRE EEHESRSGSD NVEGISGEDQ  60
DAADKPPRKK RYHRHTPQQI QELESMFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR  120
TQMKTQLERH ENALLRQEND KLRAENMSIR EAMRNPICTN CGGPAMLGDV SLEEHHLRIE  180
NARLKDELDR VCNLTGKFLG HHHHHYNSSL ELAVGTNNGG NFAFPPDFGG GGGCLPPPQQ  240
QQPTGIDGID QKSVLLELAL TAMDELVKLA HSEEPLWVKS LDGERDELNQ DEYMRTFSST  300
KPTGLATEAS RTSGMVIINS LALVETLMDS NRWTEMFPCN VARATTTDVI SSGMAGTING  360
ALQLMNAELQ VLSPLVPVRN VNFLRFCKQH AEGVWAVVDV SIEPVRESSG GAPVIRRLPS  420
GCVVQDMSNG YSKVTWVEHA EYDENHIHQL YRPLLRSGLG FGSQRWLATL QRQCQCLAIL  480
MSSSVTSHDN TSITPGGRKS MLKLAQRMTF NFCSGISAPS VHSWSKLTVG NVDPDVRVMT  540
RKSVDDPGEP PGIVLSAATS VWLPASPQRL YDFLRNERMR CEWDILSNGG PMQEMAHIAK  600
GQDQGVSLLR SNAMNANQSS MLILQETCID ASGALVVYAP VDIPAMHVVM NGGDSSYVAL  660
LPSGFAVLPD GGIDGGGSGD GEQRPDGGGS LLTVAFQILV NNLPTAKLTV ESVETVNNLI  720
SCTVQKIRAA LQCES*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19926s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2269680.0AK226968.1 Arabidopsis thaliana mRNA for homeodomain protein AHDP, complete cds, clone: RAFL09-36-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878511.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLR0H8W00.0R0H8W0_9BRAS; Uncharacterized protein
STRINGBostr.10064s0036.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]