PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19794s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 308aa    MW: 32930.7 Da    PI: 6.2618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19794s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191358147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
  Araha.19794s0003.1.p 13 KGPWSPEEDDLLQTLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                          79******************************.***********985 PP
2Myb_DNA-binding50.54.7e-1668109447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +T+eEd+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Araha.19794s0003.1.p  68 FTAEEDDTIILAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                           8******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.218863IPR017930Myb domain
SuperFamilySSF466892.7E-3110106IPR009057Homeodomain-like
SMARTSM007172.8E-171261IPR001005SANT/Myb domain
PfamPF002492.7E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-261466IPR009057Homeodomain-like
CDDcd001671.42E-161557No hitNo description
SMARTSM007174.3E-1364112IPR001005SANT/Myb domain
PROSITE profilePS5129418.06465114IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2167113IPR009057Homeodomain-like
PfamPF002491.4E-1368109IPR001005SANT/Myb domain
CDDcd001676.42E-1168110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSGSTRKEMD RIKGPWSPEE DDLLQTLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGG  120
GEEGQSCDFG GNGGYDGNLT DEKPLKRTAS GGGEGVVLTA LSPTGSDVSE QSQSSGFVLP  180
VSSSCHVFKP TARAGGVVIE SSSSSEEKDP MTCLSLSLPW VNESTPVELF PVKREEEEKE  240
REISGFGGDF MTVVHEMIKT EVRSYMADLQ RGNGGGSGGG GGSSCMVQGT NGRNVGFREF  300
IGIGKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40121143105C-Myb DNA-Binding Domain
1msf_C2e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00274DAPTransfer from AT2G23290Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19794s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0880070.0AY088007.1 Arabidopsis thaliana clone 40307 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885434.10.0transcription factor MYB44
SwissprotO231601e-136MYB73_ARATH; Transcription factor MYB73
TrEMBLD7LF960.0D7LF96_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__260__AT2G23290.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-174myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]