PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1971s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 478aa    MW: 53330.1 Da    PI: 5.4135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1971s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WTt Ed +l ++v+++G g+W+++ +  g+ R++k+c++rw ++l
  Araha.1971s0002.1.p  8 KGPWTTTEDAILTEYVRKHGEGNWNAVQKNSGLLRCGKSCRLRWANHL 55
                         79******************************99**********9986 PP
2Myb_DNA-binding51.42.5e-1661104146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T++E++++++++++lG++ W++ a+ ++ gRt++++k++w++
  Araha.1971s0002.1.p  61 KGSFTPDEEKIIIELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 104
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.354355IPR017930Myb domain
SuperFamilySSF466891.87E-295102IPR009057Homeodomain-like
SMARTSM007176.4E-14757IPR001005SANT/Myb domain
PfamPF002491.0E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-23962IPR009057Homeodomain-like
CDDcd001671.24E-101055No hitNo description
PROSITE profilePS5129425.32256110IPR017930Myb domain
SMARTSM007174.7E-1660108IPR001005SANT/Myb domain
PfamPF002492.5E-1561104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2563109IPR009057Homeodomain-like
CDDcd001671.31E-1163104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEGRGLKKGP WTTTEDAILT EYVRKHGEGN WNAVQKNSGL LRCGKSCRLR WANHLRPNLK  60
KGSFTPDEEK IIIELHAKLG NKWARMASQL PGRTDNEIKN YWNTRMKRRQ RAGLPLYPHE  120
IQHQGIDNDD EFEFDLTSFQ FQYQDLDHNH QNMIQYTNSS NTSSSSSSFS SSSSQPSKRP  180
RPDPLVTTNP GLNPIPDSSM DFQMFSLYNN SLENDNNQFG FSVPLSSSSS SNDPNHILEF  240
ISENSDTNNT NKKYIDAMSY SSLLMGDLEI RPSSFPLGLE NSVLELPSNQ TPTHSFSSNP  300
ILDNGVHLEP PAGNSGLLDA LLEESQALSR GGVFKDVRVS SSDLCEVQDK RVKMDFENRL  360
IDHLNSSHHS SLGTNPNIHN KYNEPTLMVK TTVDDDDDLL MSLLNNFPSA TTPLPDWYRM  420
TEIQNEASYL APPSGSILMG NHQGNGRVEP PTVPPSSSVD PMASLGSCYW SNMPSIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3061095107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028, PubMed:25268707). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter (e.g. alpha-amylase) to promote their expression (PubMed:11743113). Positive regulator of abscisic acid (ABA) responses leading to growth arrest during seed germination (PubMed:17217461). Promotes the expression of aleurone-related genes (e.g. CP1, CP, GASA1, BXL1 and BXL2) in seeds. Together with MYB33 and MYB65, promotes the programmed cell death (PCD) leading to vacuolation of protein storage vacuoles (PSVs) in the aleurone layers during seed germination (PubMed:20699403). Maybe involved in the regulation of leaves lamina morphogenesis (PubMed:25268707). Involved in pollen grain development (PubMed:22101548). Together with MYB97 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000269|PubMed:11743113, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403, ECO:0000269|PubMed:22101548, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028, ECO:0000269|PubMed:25268707}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1971s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed in germinating seeds by microRNA159 (miR159)-mediated cleavage in an abscisic acid (ABA) and ABI3-dependent manner, probably to desensitize hormone signaling during seedling stress responses (PubMed:15226253, PubMed:17217461). Induced by increased upon gibberellic acid (GA) treatment (PubMed:20699403). {ECO:0000269|PubMed:15226253, ECO:0000269|PubMed:17217461, ECO:0000269|PubMed:20699403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4119700.0AF411970.1 Arabidopsis thaliana putative transcription factor MYB101 (MYB101) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885840.10.0transcription factor MYB101
SwissprotO808830.0MB101_ARATH; Transcription factor MYB101
TrEMBLD7LEY80.0D7LEY8_ARALL; AtM1/AtMYB101/MYB101
STRINGfgenesh2_kg.4__1233__AT2G32460.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.10.0myb domain protein 101
Publications ? help Back to Top
  1. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]
  2. Xue T,Liu Z,Dai X,Xiang F
    Primary root growth in Arabidopsis thaliana is inhibited by the miR159 mediated repression of MYB33, MYB65 and MYB101.
    Plant Sci., 2017. 262: p. 182-189
    [PMID:28716415]