PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1947s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 1391aa    MW: 157320 Da    PI: 5.2795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1947s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-2712081268259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                            D ++WrKYGqK + gs+fprsYYrCt +   gC+++k+v+rs++dp+++ itY +eHnh+
  Araha.1947s0004.1.p 1208 VDLWTWRKYGQKYILGSNFPRSYYRCTDRfteGCKATKQVQRSDTDPNMFAITYISEHNHP 1268
                           599************************98888****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522003.01E-711105IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525406.19E-52145396IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.7E-28167406IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.9E-11169289IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.3E-23171186No hitNo description
PRINTSPR003641.3E-23243257No hitNo description
PRINTSPR003641.3E-23336350No hitNo description
SuperFamilySSF467851.17E-11373474IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.9E-34509858IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-16513717IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077259.5E-9576595IPR011713Leucine-rich repeat 3
Gene3DG3DSA:3.80.10.109.0E-15718868IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.3E-23808824No hitNo description
SuperFamilySSF467859.79E-610871173IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:2.20.25.809.5E-2612011270IPR003657WRKY domain
SuperFamilySSF1182906.67E-2412051270IPR003657WRKY domain
SMARTSM007741.8E-3612071269IPR003657WRKY domain
PROSITE profilePS5081126.08512091270IPR003657WRKY domain
PfamPF031065.1E-2412091268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0008219Biological Processcell death
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1391 aa     Download sequence    Send to blast
MTNCEKAEEF VCISCVDEVR YSFVSHLSEA LRQKGINNVV IDVDIDSDDL LFKIEKAGVS  60
MMVLPGNCDP SEVWLDKFAK VLECQRNKED QTVVPVLYGD SPLRDEWLSL LDFRGFSPIH  120
QSRKECSDSI LVEEIVRDVY EKLFYKGRIG IYSKLLEIEN MVNKQPIGIR CVGIWGMPGI  180
GKTTLAKAVF DRMSSAFDAS CFIEDYDKSI HEKGLYCLLE EQLFKENPGN DATIMKLSSL  240
RDRLNSKRVL VVLDDVYNAL VVESFLEGFD WLGPESLIII TSRDKQVFRL CGINQIYEVQ  300
GLNEKEALQL FLLCASSKDM REQNLHELSV KVINYANGNP LAISVYGREL KGKKKLSEME  360
TAFLKLKRRP PFKIFDAFKS SYDSLCDNEK NIFLDIACFF QGENVNYVIQ LLEGCGFFPH  420
VEIDVLVEKC LVTISENRIW LHNLTQDVGR EIINGETVQI ERRRRLWEPW SIKYLLEYNE  480
HKANGEPKTT FKRAQGSEKI EGMFLDTSNL RFDVQPSAFK NMLNLRLLKI YCSNPEVHRV  540
INFPKGSLHS LPNELRLLHW ENYPLQSLPQ SFDPRHLVEI NMPYSQLQKL WGGTKNLEML  600
RTIRLCHSQH LVDIDDLLKA QNLEVIDLQG CTRLQNFPAA GQLLRLRVVN LSGCIEIKSV  660
LEMPPNIETL HLQGTGILTF PVSTVKPNHR ELVKFLTEIP GLSEASKLEH LTSLLESSSS  720
CQDLGKLICL ELKDCSCLQS LPNMANLDLL NILDLSGCSR LNSIQGFPRF LKELYLNGTA  780
IREVPQLPQS LELLNARGSC LRSLPNMANL EFLKVLDLSG CSELETIQGF PRNLKELYFA  840
GTTLREVPQL PLSLELLNAH GSDSEKLPMH YNFSNFFDLS PQVVNDFLVK ALTYVKHIPR  900
EYTQELINKA PTFSFSAPSH KNQNATFGLQ PGSSVMTRLN TSWWNTLVGF GMLVEVAFSE  960
DYCDATGLGI SCVCRWSNKD GRSCRIERNF DCWAPAKVVS KVGKDHTFVF CDVNMCPSTG  1020
NDPDIWAGLV VYEFFPINQQ TKCLDDRFTV TRCGVRVINV TTGNTSLENI SLVLSLDPIE  1080
VSGYEAVNEV LRVSYDDLQE MDKVLFLYIA SLFNDEDVDL VAPLVAGIDL DVSSGLKVLA  1140
DVSLISVSSN EEIVMHFLLR QMGKEILHGQ SMLLSDCESS LTEDLSDLPK KKKSKAKKVG  1200
CVQATDVVDL WTWRKYGQKY ILGSNFPRSY YRCTDRFTEG CKATKQVQRS DTDPNMFAIT  1260
YISEHNHPRP TKRKALAGST HSTSSSNYSA ITTFASSRVP QNKDKPNKIH LPSSSPLGSA  1320
AVVFNEKDME ECQENMELDN DVEDTRTLAL FPEFQHQPEE EDPWSTILDG EPMTKFPSHS  1380
SGIYDDLSPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c6t_A8e-6661504151PROBABLE WRKY TRANSCRIPTION FACTOR 52
4c6t_C8e-6661504151PROBABLE WRKY TRANSCRIPTION FACTOR 52
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein involved in resistance to fungal and bacterial pathogens, including R.solanacearum, P.syringae pv. tomato and C.higginsianum. In presence of RPS4, elicites an EDS1-dependent hypersensitive response (PubMed:24146667). {ECO:0000250|UniProtKB:Q9FH83, ECO:0000269|PubMed:19519800, ECO:0000269|PubMed:19826224, ECO:0000269|PubMed:24146667, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1947s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4704720.0AB470472.1 Arabidopsis thaliana at5g45260 mRNA for putative disease resistance protein, complete cds, ecotype: RLD-0.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871197.10.0LOW QUALITY PROTEIN: disease resistance protein RRS1
SwissprotC4B7M50.0WR52W_ARATH; Disease resistance protein RRS1
TrEMBLL7Z7P40.0L7Z7P4_ARATH; Resistance to ralstonia solanacearum 1 (Fragment)
STRINGAT5G45260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2506814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.10.0Disease resistance protein (TIR-NBS-LRR class)
Publications ? help Back to Top
  1. Zhang ZM, et al.
    Mechanism of host substrate acetylation by a YopJ family effector.
    Nat Plants, 2017. 3: p. 17115
    [PMID:28737762]