PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19350s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 409aa    MW: 44093.3 Da    PI: 8.2742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19350s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.9e-12326327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                           elCr+f+r G C+yG++C+F H++
  Araha.19350s0012.1.p  3 KELCRNFQR-GSCRYGENCRFLHPQ 26
                          69*******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-8126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.15127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6225IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-8326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRKELCRNFQ RGSCRYGENC RFLHPQQAKP NNPFGFGTQQ QPQQQQQQQN SSNPFGFGVQ  60
GGGSSRPNQF QPFENTWSRT ASTPTAGGTA ASTQQTGKQP ADHKCTDPAA CKRVMQDDFK  120
NERPMWKLTC YGHWKYFPCD VMGDISYEEL RAMAYEEAKR GIPLQSIVEK ERNLQNSKIA  180
EFENFLRNPY KGSVTANQSP FAATTPSIFP PTGQINSSPP GLSGFNQQTA FPNTNAGGLS  240
SSGPPNAFAS FNQQSNNQQT TFPNTNAGGV SSSGPTNAFA SFNKQPNAFS VNTPQPVPSG  300
PSGFQTHPST TFKPASFGPG PGLATTPQNN NIFGPSTPTP APNTSQNNQT AFNFNVPVAS  360
FTAPAVDTTN TSSGNELQIG DPVDSSIWLK EKWNPGEIPE QAPPDAFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19350s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0147440.0BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891135.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLD7KSN00.0D7KSN0_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.2__1809__AT1G75340.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.10.0C3H family protein