PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.19350s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 11257.7 Da PI: 9.8638 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.2 | 3.2e-07 | 11 | 54 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + +a + + ++ +W+ +a+ +g g+t +++k ++ Araha.19350s0002.1.p 11 SWTFNQNKMFERALAVYDKDtpdRWHNVAKAVG-GKTVEEVKRHY 54 799999*************9*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.098 | 4 | 58 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-5 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.88E-12 | 10 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 11 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-5 | 12 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MASNSRSSTS SWTFNQNKMF ERALAVYDKD TPDRWHNVAK AVGGKTVEEV KRHYDILVED 60 LFNIETGRVP LPNYKTFESN SRGINDFDTR KMKNLKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-33 | 1 | 97 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.19350s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ395346 | 1e-130 | DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077825.1 | 1e-63 | RAD-like 6 | ||||
Swissprot | Q1A173 | 1e-64 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A178W926 | 3e-62 | A0A178W926_ARATH; RSM3 | ||||
STRING | AT1G75250.1 | 5e-58 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-61 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Araha.19350s0002.1.p |