PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1929s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 924aa    MW: 104854 Da    PI: 7.2699
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1929s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1162.48.1e-51301463118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e  +rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+e++
  Araha.1929s0004.1.p  30 DEaYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDT 119
                          45589************************************************************************************* PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ptf rrcywlL++++e+ivlvhy+e++
  Araha.1929s0004.1.p 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146
                          ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.85925151IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-4532144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.68E-13374460IPR014756Immunoglobulin E-set
CDDcd002044.79E-13560670No hitNo description
PfamPF127966.8E-7561640IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-15561673IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.31E-15569677IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.761578643IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808611643IPR002110Ankyrin repeat
SMARTSM002484.5E-6611640IPR002110Ankyrin repeat
PROSITE profilePS500966.614760786IPR000048IQ motif, EF-hand binding site
SMARTSM00015260775797IPR000048IQ motif, EF-hand binding site
SMARTSM000150.001798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.615799823IPR000048IQ motif, EF-hand binding site
PfamPF006125.5E-4801820IPR000048IQ motif, EF-hand binding site
SMARTSM000156.8874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.37875904IPR000048IQ motif, EF-hand binding site
PfamPF006120.22876896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 924 aa     Download sequence    Send to blast
MAGVDSGRLI GSEIHGFHTL QDLDIQTMLD EAYSRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDTP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSITDHLSPI IVAEDTSSGV  180
HNACNTGFEV RSNSLGSRNH EIRLHEINTL DWDELLVPAD ISNQSHPTEE DMLYFTEQLQ  240
TAPRGSAKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHSH CGVDPNLQRR  300
DSIATGTDQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQDSSTPPT  360
VFPSHSDIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS FQHFGRSNLF CICGELRVTA  420
EFLQMGVYRC FLPPQSPGVV NLYLSVDGNK PISQSFSFEH RSVQFIEKAI PQDDQLYKWE  480
EFEFQVRLAH LLFTSSNKIS ILTSKISPDN LLEAKKLASR TSHLLNSWAY LMKSIQANEV  540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW  600
ANISLDFRDK QGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ  660
KGYDGLAAFL AEKCLLAQFK DMEMAGNISG KLETIKAEKS SNPGNANEEE QSLKDTLAAY  720
RTAAEAAARI QGAFREHELK VRSSAVRFAS KEEEAKNIIA AMKIQHAFRN FEVRRKIAAA  780
ARIQYRFQTW KMRREFLNMR NKAIRIQAVF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR  840
KGFRGLQVSQ PEEKEGSEAV EDFYKTSQKQ AEERLERSVV KVQAMFRSKK AQQDYRRMKL  900
AHEEAQLEYD GMKELEQMAM EES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1929s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282950.0AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870178.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLD7MA720.0D7MA72_ARALL; Calmodulin-binding transcription activator 5
STRINGfgenesh1_pg.C_scaffold_70023210.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]