PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19277s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 20164.5 Da    PI: 10.0116
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19277s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.21.1e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien + rqvtfskRr g++KKA+ELSvLCda+va i+fs++g+l+eyss
  Araha.19277s0005.1.p  9 KKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSS 59
                          68***********************************************96 PP
2K-box661.3e-22851701196
                 K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                           e+  ++l+ e++++ k+i+ L+  +R+llG++L+s+s+ eLq++ +q+eksl  +Rs+K el+ +q+++l++ke+el +e k+Lr+
  Araha.19277s0005.1.p  85 ERYLQELKMEMNRMVKKIDLLEVHHRKLLGKGLDSCSVAELQEIDTQIEKSLLIVRSRKAELYADQLKKLKEKERELLNERKRLRE 170
                           667899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-29323IPR002100Transcription factor, MADS-box
CDDcd002655.87E-41375No hitNo description
SuperFamilySSF554551.44E-32387IPR002100Transcription factor, MADS-box
PfamPF003194.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.31888171IPR002487Transcription factor, K-box
PfamPF014867.9E-2189170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS  60
EMEKIIERYD KFTNALYVAE RPQVERYLQE LKMEMNRMVK KIDLLEVHHR KLLGKGLDSC  120
SVAELQEIDT QIEKSLLIVR SRKAELYADQ LKKLKEKERE LLNERKRLRE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19173173MEF2 CHIMERA
6byy_B2e-19173173MEF2 CHIMERA
6byy_C2e-19173173MEF2 CHIMERA
6byy_D2e-19173173MEF2 CHIMERA
6bz1_A2e-19173173MEF2 CHIMERA
6bz1_B2e-19173173MEF2 CHIMERA
6bz1_C2e-19173173MEF2 CHIMERA
6bz1_D2e-19173173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19277s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412200.0AY141220.1 Arabidopsis thaliana MADS-box protein AGL71 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872013.11e-116MADS-box protein AGL71 isoform X2
SwissprotQ9LT931e-112AGL71_ARATH; MADS-box protein AGL71
TrEMBLD7MRJ81e-115D7MRJ8_ARALL; Predicted protein
STRINGAl_scaffold_0008_15581e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.11e-101AGAMOUS-like 71