PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.19277s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 298aa MW: 31755.9 Da PI: 6.6756 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.4 | 7.3e-36 | 52 | 124 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 + k++ +++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Araha.19277s0002.1.p 52 APKRPAKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsV 124 56899**********************************************************8888844431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-29 | 57 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.234 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MESNQEGKAI QEIDQVATMT HLSNPNPKTK PGMMMLMKQE DGYLQPVMSK PAPKRPAKDR 60 HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL LERAEPAIIE ATGTGTVPAI 120 AVSVNGTLKI PTSAPVESNG GGDGDGDLMK KRRKRNCTSE FVDVNEHDSC YSSVTSGLAP 180 ITASNYGVNI MNVNTTGLMP FWPMGMGTAY VTGGPNQMGQ MWAIPTVATA SFLNVGARPV 240 SSYDVSNASA AEPEMETSGG GGATQPLRDF SLEIYDKKEL QFLGGSGDSS PSSCHET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 153 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00007 | PBM | Transfer from 495258 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.19277s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237330 | 0.0 | AC237330.1 Arabidopsis lyrata clone JGIFAFI-57C3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871355.1 | 0.0 | transcription factor TCP19 | ||||
Refseq | XP_020871356.1 | 0.0 | transcription factor TCP19 | ||||
Swissprot | Q9LT89 | 1e-176 | TCP19_ARATH; Transcription factor TCP19 | ||||
TrEMBL | D7MRK3 | 0.0 | D7MRK3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.8__1074__AT5G51910.2 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12583 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-179 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.19277s0002.1.p |