PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.19157s0011.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 266aa MW: 30841.2 Da PI: 8.3674

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.19157s0011.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.5	1e-26	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +e+sledlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Araha.19157s0011.2.p 199 AELSLEDLSKYFGLTIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 248 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.757	181	265	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-21	201	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MAHSLTSLAV FQSVTRKEML RSLHVYGSVE IEREFLFKSK SCYVEKRAKP LFRSEDFRRP 60 EISEGSVFGT WRCIFVFRFN HSLPRFPTLL CLSRNPKLED IPNLANELKF ISELEPKKPS 120 KISEEEQISE DEQCSTDEYY NSDLPKPRKL VLKQDLNCLP DSETESKESE NEKTEHSESD 180 AKSKILERKN RRTTSRHVAE LSLEDLSKYF GLTIVEASRN LNVGLTVLKK KCREFGIPRW 240 PHRKIKSLDS LIQDLQVFSL SLHQS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.19157s0011.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	1e-107	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	1e-107	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	1e-107	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002869079.2	1e-178	LOW QUALITY PROTEIN: protein RKD5
Swissprot	O81791	1e-153	RKD5_ARATH; Protein RKD5
TrEMBL	D7MCF1	1e-178	D7MCF1_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.7__520__AT4G35590.1	1e-179	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-133	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Araha.19157s0011.2.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]