PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18846s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 29149.4 Da PI: 5.6623 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 2 | 46 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ +++++ +lG++ W++Ia +++ gRt++++k++w+++ Araha.18846s0006.1.p 2 RGNFTAEEEQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 46 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-16 | 1 | 49 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 27.546 | 1 | 51 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-15 | 2 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-16 | 2 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 3 | 48 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.00E-12 | 4 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
KRGNFTAEEE QTIINLHSLL GNKWSSIAGH LPGRTDNEIK NYWNTHIRKK LIQMGIDPVT 60 HRPRTDHLNV LAALPQLLAA SNFNNLLNLN QNIQLDATSV AKAQLLHSMI QVLSSNNTSS 120 SFDIHHTNNN LFGQSSFLEN LPNISENPYD QTQSLSHIDN QPLDPFSSPI RVVAHQLDQN 180 LIPPLISASP DESKETQMMV KNKEIMKHND HTSNPSSTST FTQDHQPWCD IIDDEASDSY 240 WKEIIEQTCS EPWPFRE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18846s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF249310 | 0.0 | AF249310.2 Arabidopsis thaliana putative transcription factor (MYB107) mRNA, complete cds. | |||
GenBank | AY519583 | 0.0 | AY519583.1 Arabidopsis thaliana MYB transcription factor (At3g02940) mRNA, complete cds. | |||
GenBank | BT025660 | 0.0 | BT025660.1 Arabidopsis thaliana At3g02940 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020888489.1 | 0.0 | transcription factor MYB39 | ||||
TrEMBL | D7L0B1 | 0.0 | D7L0B1_ARALL; MYB107 | ||||
STRING | fgenesh2_kg.3__241__AT3G02940.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 1e-157 | myb domain protein 107 |
Link Out ? help Back to Top | |
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Phytozome | Araha.18846s0006.1.p |