PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1876s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 301aa    MW: 32888.4 Da    PI: 9.838
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1876s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.7e-33162218158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep++VNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  Araha.1876s0002.1.p 162 QEPVFVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 218
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-36160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.437161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-28163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.3E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.3E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGIEDMHSKS DSGNKIDSEL HGTLPSSINS LNPWHRAAAA CNANSCVEAG DKSSKSIALA  60
LESNGSKSPS NRDDNVNKES QVTTSPQSAG SDKNQESLHP GITQPPPHPQ LVGPTVGWAS  120
SNPYQDPYYA GVMGAYGHHP LGFVPYGGMP HSRMPLPPEM AQEPVFVNAK QYQAILRRRQ  180
ARAKAELEKK LIKSRKPYLH ESRHQHAMRR PRGTGGRFAK KTNTEASKRK VEEKSNGRVT  240
HSPTSSNSDQ GEAWNGDYRT PQGDEMQSSA YKRREEGECS GQQWNSLSSN HPSQARLAIK  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18162218258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1876s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4120560.0AF412056.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
GenBankAY0939710.0AY093971.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883277.10.0nuclear transcription factor Y subunit A-9 isoform X1
SwissprotQ945M90.0NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLD7KZY10.0D7KZY1_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
STRINGscaffold_302497.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.10.0nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]