PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1852s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family E2F/DP
Protein Properties Length: 390aa    MW: 42811 Da    PI: 6.241
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1852s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27104186271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Araha.1852s0002.1.p 104 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 186
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.7E-1412389IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.6E-4699192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-35103186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25105186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21106187IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.29E-42191294IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.54E-42193342No hitNo description
SMARTSM011385.1E-67193348IPR014889Transcription factor DP, C-terminal
PfamPF087813.3E-42194311IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTTGSNSNHN HHDDGSGRSN NNNNNPSTRS WGTAVSGQSV STSGSMGSPS SRSEQTITVA  60
TSASDSTFLR MNNLDIQGDD AGSQGASGIK KKKRGQRAAG PDKSGRGLRQ FSMKVCEKVE  120
SKGRTTYNEV ADELVAEFAL PNNDGTSPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK  180
EIQWRGLPRT SLSDIEELKN ERLSLRNRIE KKTAYSQELD EQYVGLQNLI QRNEHLYSSG  240
NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNFV LKTMKFCDQP  300
PQQPNGHNNS QVVSHNFTPE NPNEGPSTGP APQADMYQSH LQPQQHEQHS QLQIIPTPET  360
NKVASAADTA PVKSPSLPGI MNSSVKPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B5e-3797191193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1852s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879105.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD7LWN70.0D7LWN7_ARALL; Uncharacterized protein
STRINGBostr.2128s0112.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.10.0Transcription factor DP