PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18448s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 18798.2 Da PI: 8.5028 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Araha.18448s0001.1.p 75 HECSICGSEFTSGQALGGHMRRH 97 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-6 | 72 | 100 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-4 | 73 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.5E-12 | 74 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.868 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MMMGQEEVGS DQTQIIKGKR TKRQRSSSTF VEKTRLPLMQ PKSSLSEGQN SHFKVSGSAL 60 ASQASNIINK TNKVHECSIC GSEFTSGQAL GGHMRRHRTA TTAVSPVAAT AEVSRNSTEE 120 EIEISIGRSM EQQRKYLPLD LNLPAPEDDL RESKFQGIVF SATPALIDCH Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18448s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005851 | 1e-179 | AC005851.3 Arabidopsis thaliana chromosome 2 clone F24D13 map B68, complete sequence. | |||
GenBank | AC006202 | 1e-179 | AC006202.4 Arabidopsis thaliana chromosome 2 clone T3B23 map mi54, complete sequence. | |||
GenBank | AK175493 | 1e-179 | AK175493.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-92-D09. | |||
GenBank | AK229812 | 1e-179 | AK229812.1 Arabidopsis thaliana mRNA for putative zinc-finger protein, complete cds, clone: RAFL21-88-O10. | |||
GenBank | CP002685 | 1e-179 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180387.2 | 3e-94 | C2H2-type zinc finger family protein | ||||
Swissprot | Q681X4 | 2e-95 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A178VUQ3 | 6e-93 | A0A178VUQ3_ARATH; Uncharacterized protein | ||||
STRING | AT2G28200.1 | 1e-93 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5862 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-86 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.18448s0001.1.p |
Publications ? help Back to Top | |||
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