PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1835s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 537aa MW: 60374.9 Da PI: 6.2109 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.7 | 5.4e-10 | 371 | 408 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + Araha.1835s0010.1.p 371 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 408 664459******************************88 PP | |||||||
2 | BELL | 119.5 | 1.5e-38 | 231 | 302 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+elq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vaglgsak Yts+Al++iSrhFr+L+dai+eqi Araha.1835s0010.1.p 231 EREELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGLGSAKAYTSVALNRISRHFRALRDAIKEQI 302 799********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-49 | 159 | 300 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-45 | 165 | 298 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 349 | 412 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.4E-10 | 352 | 416 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.63E-12 | 352 | 413 | No hit | No description |
SuperFamily | SSF46689 | 1.75E-17 | 353 | 419 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 355 | 418 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.7E-18 | 369 | 408 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MAVYYPSNVG CYQQEPIFLN HQQQQASSSS AAASFTVTGG DNVRNEMVFI PPTTTATGDV 60 VTGNGAVSSS DLSFHDGQGL SLSLGTQISV APFHFHQYQL GFTQNPSISV KETSPFNVDE 120 MSVKSKEMML LGQSDPSSGY AGNGGSGFYN NYRYNETSGG FMSSVLRSRY LKPAQNLLDE 180 VVSVKKELNQ MGKKKMKVND FNNGSKEIEG GGSGELSNDS NGKSMELSTV EREELQNKKN 240 KLLTMVDEVD KRYNQYYHQM EALASSFEIV AGLGSAKAYT SVALNRISRH FRALRDAIKE 300 QIQIIREKLG EKGGESLDEQ QGERIPRLRY LDQRLRQQRA LHQQLGMVRP AWRPQRGLPE 360 NSVSVLRAWL FEHFLHPYPK ESEKIMLAKQ TGLSKNQVAN WFINARVRLW KPMIEEMYKE 420 EFGDESELLI SKSSQEPNST TQEDSSSQQQ QQQENNNNNL TYSSADTTNI VFSSETKPDR 480 VLGNDNEPQQ QINRSSDYDT LMNYHGFGVD DYRYISGSNQ QESRFSNSHH LHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1835s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 0.0 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870163.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_020870164.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_020870165.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | D7KI49 | 0.0 | D7KI49_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__2150__AT1G19700.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Link Out ? help Back to Top | |
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Phytozome | Araha.1835s0010.1.p |
Publications ? help Back to Top | |||
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