PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.18327s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 314aa MW: 35927.7 Da PI: 8.615

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.18327s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.8	9.2e-32	207	261	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH++Fv+a+++LGG+++AtPk+i++lmkv+gLt+++vkSHLQkYR++ Araha.18327s0004.1.p 207 QRRRWSQDLHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMH 261 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-28	203	264	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.66E-17	203	264	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.598	203	263	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.0E-25	207	261	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010092	Biological Process	specification of organ identity
GO:0010629	Biological Process	negative regulation of gene expression
GO:0048449	Biological Process	floral organ formation
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MVQTETDQRM GLNLDLSIYS LPKPLSQFLD QVSRIKDNHS KLSEIDGYVG KLEEERKKID 60 VFRRELPLCM LLLNEAIEAL NEARKGSSVM ASNGKFDERE GAKPETDKKS WMSSAQLWIS 120 NPNSQLQSTN EEEDRCVSQN PFQTCNYPNQ GGAFLPFNPP PPPAPLSLMT PTSDMMMDCS 180 RIEQNHHHHH QFNKPSSQSH HIQKKEQRRR WSQDLHRKFV DALHRLGGPQ VATPKQIRDL 240 MKVDGLTNDE VKSHLQKYRM HIRKHPLHPT KTLSSSDQPG VLERESQSLI SLSRSDSPQS 300 PLAYQLMLYM LKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00475	DAP	Transfer from AT4G37180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.18327s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316664	0.0	AK316664.1 Arabidopsis thaliana AT4G37180 mRNA, complete cds, clone: RAFL06-70-N17.
GenBank	BT028985	0.0	BT028985.1 Arabidopsis thaliana At4g37180 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872897.1	0.0	transcription factor HHO5
Swissprot	F4JRB0	0.0	HHO5_ARATH; Transcription factor HHO5
TrEMBL	A0A178V7R0	0.0	A0A178V7R0_ARATH; Uncharacterized protein
STRING	AT4G37180.2	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-170	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.18327s0004.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]