PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.18278s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 32705.5 Da PI: 6.522 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 137 | 187 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+g+ Araha.18278s0003.1.p 137 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRGH 187 59****999.**********954...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.12E-34 | 136 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.9E-32 | 137 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-39 | 137 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 137 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.02E-23 | 137 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-13 | 138 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDFDEELNLC ITKGKNVDHS FGEASSTSPR SMKKMKSPNR PKPYFQSYSS PYSLGAFPFS 60 LDPTIQNQQQ QLGSYVPVEQ QHDPTMQGQK QMISFSPQQQ QQQYMAKYWS DTLNLSPRGR 120 MMMMSQEAVQ PYSATKLYRG VRQRQWGKWV AEIRKPRSRA RLWLGTFDTA EEAAMAYDRQ 180 AFKLRGHSAT LNFPEHFVNK ESELHDSNSS DQKEPETPQP SKVNLESKEL AVIDVGRDEG 240 MAEAWYNAVT LGWGPESPLW DDLDSSHQFS ESSSSSSLSC PMRPFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 136 | 194 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00458 | DAP | Transfer from AT4G28140 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.18278s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161572 | 0.0 | AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. | |||
GenBank | AY074574 | 0.0 | AY074574.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds. | |||
GenBank | AY097394 | 0.0 | AY097394.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | DQ011579 | 0.0 | DQ011579.1 Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872099.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
Swissprot | Q9M0J3 | 0.0 | ERF54_ARATH; Ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | D7MDM6 | 0.0 | D7MDM6_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.7__1395__AT4G28140.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28140.1 | 0.0 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.18278s0003.1.p |
Publications ? help Back to Top | |||
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