PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.18108s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13421.3 Da PI: 7.3823 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 7.8e-13 | 22 | 86 | 31 | 98 |
.--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 31 eesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++ +tl+++sg + +v++ + ++++ ++ GW +Fvk++ L+e+D +vFk++g sef v vf+ Araha.18108s0004.1.p 22 KLPQIVTLKSPSGATDSVRV--DEYDDKtLAFGCGWDKFVKDHLLEENDLLVFKFHGLSEF--EVLVFD 86 36678***************..999888799***********************9887999..777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.842 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0032 | 2 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.39E-14 | 14 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-14 | 14 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-9 | 20 | 86 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.68E-11 | 22 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
MTVKNPRLYE PYLKFSTYCK RKLPQIVTLK SPSGATDSVR VDEYDDKTLA FGCGWDKFVK 60 DHLLEENDLL VFKFHGLSEF EVLVFDGQTL CEKPTSYFVR KCGHAEKTKG TDFNATP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.18108s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL035678 | 1e-118 | AL035678.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project). | |||
GenBank | AL161583 | 1e-118 | AL161583.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79. | |||
GenBank | CP002687 | 1e-118 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872332.1 | 2e-61 | B3 domain-containing protein REM16 isoform X1 | ||||
Refseq | XP_020872333.1 | 2e-61 | B3 domain-containing protein REM16 isoform X2 | ||||
Swissprot | Q8RYD1 | 3e-53 | REM16_ARATH; B3 domain-containing protein REM16 | ||||
TrEMBL | D7M8S6 | 1e-54 | D7M8S6_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_749 | 2e-55 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-55 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.18108s0004.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|