PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.17955s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 148aa MW: 16520.2 Da PI: 4.7334 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.9e-10 | 28 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+eE +++ +a + + ++ +W+++a++++ g+t +++ + Araha.17955s0001.1.p 28 KWTAEENKKFENALAFYDKDtpdRWSKVAAMLP-GKTIGDVIKQYK 72 8********************************.***999988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 21 | 75 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 23 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-10 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-12 | 27 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-8 | 28 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-7 | 28 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MHRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWSKVAAMLP 60 GKTIGDVIKQ YKELEEDVSD IEAGLIPIPG YASDSFTLDW GGYDGAGGNN GFNMNGYYFS 120 AAGGKRGSAA RTAEHERKKG VPWTEEEH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-18 | 26 | 93 | 8 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.17955s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003028 | 0.0 | AC003028.3 Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence. | |||
GenBank | AK118135 | 0.0 | AK118135.1 Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04. | |||
GenBank | AY519529 | 0.0 | AY519529.1 Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds. | |||
GenBank | BT006122 | 0.0 | BT006122.1 Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181344.2 | 1e-104 | Duplicated homeodomain-like superfamily protein | ||||
Swissprot | Q8S9H7 | 7e-48 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A178VZA4 | 1e-102 | A0A178VZA4_ARATH; Uncharacterized protein | ||||
TrEMBL | Q8GXN7 | 1e-102 | Q8GXN7_ARATH; Duplicated homeodomain-like superfamily protein | ||||
STRING | AT2G38090.1 | 1e-103 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 9e-81 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.17955s0001.1.p |
Publications ? help Back to Top | |||
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