PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17298s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27700.6 Da    PI: 5.2923
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17298s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.8e-24958150
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          krie ++nrq+tfskR++g++KKA+ELS+LCd++ a+++fs++++l  +s
  Araha.17298s0003.1.p  9 KRIEKSTNRQITFSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFS 58
                          79******************************************998776 PP
2K-box19.73.6e-081281941379
                 K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                            +e+l+qe+ +L+k+++  ++e+R++  + +   s++e++  e++L + l+++ +++++ll+++ e 
  Araha.17298s0003.1.p 128 VEEELEQEVCRLQKQLQISEEELRKFEPDPVRFTSMEEIEACETHLVNTLTRVVQRREHLLRKSCEA 194
                           46899********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.24161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-22323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-222338IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-223859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRVKLELKR IEKSTNRQIT FSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSAQ  60
TRIEDVLARY INLPDQEREN AIVFPDQSKR QAIQNKEYLL RTLEKLKIED DMALQINEPR  120
PEAINTDVEE ELEQEVCRLQ KQLQISEEEL RKFEPDPVRF TSMEEIEACE THLVNTLTRV  180
VQRREHLLRK SCEAPSNQQS MQGILLNDVV EDWGPEAEPK QAHVMANSAH QSNQLRSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18191192MEF2 CHIMERA
6bz1_B2e-18191192MEF2 CHIMERA
6bz1_C2e-18191192MEF2 CHIMERA
6bz1_D2e-18191192MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17298s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0121280.0BT012128.1 Arabidopsis thaliana At1g77950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889727.11e-164agamous-like MADS-box protein AGL66
SwissprotQ1PFC21e-105AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLD7KXQ31e-164D7KXQ3_ARALL; Transcription factor
STRINGfgenesh2_kg.2__2429__AT1G77950.21e-165(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.21e-160AGAMOUS-like 67
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]