PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.17241s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26383.1 Da PI: 10.3682 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 2e-18 | 130 | 217 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k +++s+v+ +l lp +f+++h gk+ + +tl de+g+++e + rk++ l++GW +F+ a++L gD++vF+l++r+ Araha.17241s0002.1.p 130 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKQ--DGVITLIDEEGEEYETIYLARKNG----LSGGWMGFAVAHNLAFGDTLVFELVHRTA 212 89************************6663..448***************667776....*************************9999 PP E..EEEE CS B3 90 felvvkv 96 f +v + Araha.17241s0002.1.p 213 F--KVYI 217 9..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-24 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 125 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.02E-25 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 130 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-25 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVVAKQSNYE EFRLKRVEEN KKRMEALNLQ KLSQNLNSTS VKNSPMKKRS IPRTPEKQMV 60 IVRRSSRISN SSSIPVYREV DVQRIQIRRR GLSKRRDLSN RVYVSEEIRE EAISRAEKFQ 120 DELGSGYPSF VKSMLQSHVS GGFWLGLPVQ FCRSHLGKQD GVITLIDEEG EEYETIYLAR 180 KNGLSGGWMG FAVAHNLAFG DTLVFELVHR TAFKVYITRV GSSGESSKDM S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.17241s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007647 | 2e-80 | AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21. | |||
GenBank | CP002688 | 2e-80 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879833.1 | 1e-154 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 1e-134 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | D7MRH4 | 1e-144 | D7MRH4_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh1_pm.C_scaffold_8000473 | 1e-145 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-117 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.17241s0002.1.p |
Publications ? help Back to Top | |||
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