PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17172s0006.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 680aa    MW: 76009.1 Da    PI: 5.7613
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17172s0006.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.22.8e-49772241145
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                           gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+      + + ++s
  Araha.17172s0006.2.p  77 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN------NVFPTRS 159
                           6899************************************************************************......7888888 PP

                DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                           +es+l+ s+lk++a+a+   +++++++ ++ +sp+slds+ +a++        +  +p+ sv +l
  Araha.17172s0006.2.p 160 IESPLSsSTLKNCAKAALECQQHSVLRIDENLSPVSLDSVVIAESdhpgngryTGASPIASVGCL 224
                           888888789*********************************98877777776666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.9E-4778222IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.41E-159243677IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-167246676IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.2E-81252640IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53282296IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53303321IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53325346IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53418440IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53491510IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53525541IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53542553IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53560583IPR001554Glycoside hydrolase, family 14
PRINTSPR007509.8E-53598620IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MHTLNTTTGS QDPNLDPIPD PDQFPNRNRN NPQSRRPRGF AAAAAAASIA PTENDVNNGN  60
IAGIGGGEGS SSGGGGGGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR  120
ADMNDVIAAL AREAGWSVDA DGTTYRQSHQ PNNVFPTRSI ESPLSSSTLK NCAKAALECQ  180
QHSVLRIDEN LSPVSLDSVV IAESDHPGNG RYTGASPIAS VGCLEANQLI QDVHSAEQRN  240
DFTESFYVPV YAMLPVGIID SFGQLVDPEG VRQELSYMKS LNVDGVVIDC WWGIVEGWNP  300
QKYVWSGYRE LFNIIRDFKL KLQVVMAFHE YGGNASGNVM ISLPQWVLEV GKDNPDIFFT  360
DHEGRRSFEC LNWSIDKERV LHGRTGIEVY FDFMRSFRSE FDDFFVEGLI AAVEIGLGAS  420
GELKYPSFPE RMGWIYPGIG EFQCYDKYSQ SNLQKEAKSR GFAFWGKGPE NAGQYNSQPH  480
ETGFFQERGE YDSYYGRFFL NWYSQLLIGH AENVLSLANL AFEETKIIVK IPAIYWSYKT  540
ASHAAELTAG YYNPSNRDGY SLVFETLKKY SVTAKFVCPG PQMSLNAHEE ALADPEGLSW  600
QVINAAWDKG LLIGGENMIT CFDREGCMRL IDIAKPRNHP DSYHFSFFTY RQPSPLVQGS  660
TCFPDLDYFV KRMHGDIQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11624767611444Beta-amylase
5wqs_A1e-11624767712447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17172s0006.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871132.10.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGfgenesh1_pg.C_scaffold_80002710.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]