PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17006s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 450aa    MW: 49891 Da    PI: 4.8463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17006s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13115138326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                            e C+f++rtG Ck+G++CkF+H+
  Araha.17006s0008.1.p 115 AEDCSFYMRTGSCKFGSSCKFNHP 138
                           689********************9 PP
2zf-CCCH32.51.4e-10165185525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                            C++++rtG CkyG++C+F+H
  Araha.17006s0008.1.p 165 DCKYYFRTGGCKYGETCRFNH 185
                           5******************** PP
3zf-CCCH40.25.6e-13207232126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +++++C++++r+G Ck+G+ CkF+H+
  Araha.17006s0008.1.p 207 PGEVECPYYMRNGSCKFGAECKFNHP 232
                           5789*********************9 PP
4zf-CCCH21.83.3e-07349374227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tG Ck+  +Ck++H++
  Araha.17006s0008.1.p 349 DQPECSYYMKTGDCKFKFNCKYHHPK 374
                           689*********************96 PP
5zf-CCCH352.4e-11396419326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           + +C +++r+G+Ck+G+ C+F H+
  Araha.17006s0008.1.p 396 QNICTYYSRYGICKFGPACRFDHS 419
                           679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-6111139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263112140IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7112139IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11115138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5118137IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46160188IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8165185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5165188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5166186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516206234IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7206233IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10208232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5210233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4212231IPR000571Zinc finger, CCCH-type
SMARTSM003560.16347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056347375IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5351377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6391419IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5393420IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511393421IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8396419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4398420IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MVNSEETADG FEPKPVSQSY SGDSSADRSL SDLDNAAEDL SDKLKNVGLD EVTKEKSETI  60
MSVAESYGGL DSNVVVTSNE EEEEEQDGDG YDYGDGWSEN ESEMREVVYP VRPGAEDCSF  120
YMRTGSCKFG SSCKFNHPLA RKIQIARDNK VREKEEDGGK LGLIDCKYYF RTGGCKYGET  180
CRFNHTLPKS CLASPPELNF LGLPIRPGEV ECPYYMRNGS CKFGAECKFN HPDPTTIGGT  240
DSPSFHGNNG VSIGTFSPKS TFQASSTSWT SPRHVNGTSP FIPVMLSQTH GVPSQTPEWN  300
GYQASVYSSE RGVFSPSTTY LMNNLSAETS MLSQYRHQMP AEEFPERPDQ PECSYYMKTG  360
DCKFKFNCKY HHPKNRLPKL PPYALNDKGL PLRPDQNICT YYSRYGICKF GPACRFDHSV  420
QPSYSTESSQ AIVEPPQVSA NGNESDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17006s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875904.10.0zinc finger CCCH domain-containing protein 43 isoform X2
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGscaffold_501792.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]