PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16919s0004.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 614aa    MW: 68728.6 Da    PI: 7.1059
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16919s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-095135501954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Araha.16919s0004.2.p 513 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 550
                           664559******************************88 PP
2BELL122.81.4e-39371442172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+++q+
  Araha.16919s0004.2.p 371 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVTDQL 442
                           589******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-78301440IPR006563POX domain
PfamPF075262.1E-49306439IPR006563POX domain
PROSITE profilePS5007112.568491554IPR001356Homeobox domain
SMARTSM003891.2E-9494558IPR001356Homeobox domain
CDDcd000862.11E-11494555No hitNo description
SuperFamilySSF466892.61E-17495561IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29497560IPR009057Homeodomain-like
PfamPF059203.0E-18511550IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGIAKTSPTT TTLLKTLHNN SMSQDYHHHH NQHQGGIFNF SNGFDRSDSP NLTTQQKQEH  60
QRVEMDEEPS AAGGRIPVYE SAGMLSEMFN FPGSSGGGRD LDHGQSFRSN RQLLEEQHQN  120
IPAMNATDSA TATAAAMQLF LMNPPPPQQP QSPSSTTTTR SHHNSSTLHM LLPNPSTNTT  180
THHQGYTNHM SMHQLPHQHH QQMTWQSSSS DHYHNNSQTE IGTVHVENSG GQGLSLSLSS  240
SLEAAAKAEE YRNIYYGANS SNASPHHQYN QFKTLLANSS QHQHQVLNQF RSSPAASSSS  300
IGAVNILRNS RYTTAAQELL EEFCSVGRGF LKKNKHGNSS NPNTIGGDGG GGSSSPSAGA  360
VKDHPPLSAS DRIEHQRRKV KLLTMLEEVD RRYNHYCEQM QMVVNSFDIV MGHGAALPYT  420
ALAQKAMSRH FRCLKDAVTD QLKQSCELLG DKDAAGISSS GLTKGETPRL RLLEQSLRQQ  480
RAFHQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV  540
SNWFINARVR LWKPMVEEMY QQESKERERE REEELEENEE DQETKNSNND KSTKSNNDES  600
NFTAARTTSQ TPTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16500558563Homeobox protein Meis2
3k2a_B2e-16500558563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16919s0004.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869016.10.0BEL1-like homeodomain protein 2 isoform X1
RefseqXP_020874343.10.0BEL1-like homeodomain protein 2 isoform X1
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLD7MB330.0D7MB33_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_70003080.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]