PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.16919s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 614aa MW: 68728.6 Da PI: 7.1059 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 513 | 550 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Araha.16919s0004.1.p 513 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 550 664559******************************88 PP | |||||||
2 | BELL | 122.8 | 1.4e-39 | 371 | 442 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+++q+ Araha.16919s0004.1.p 371 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVTDQL 442 589******************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-78 | 301 | 440 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-49 | 306 | 439 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 491 | 554 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 494 | 558 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.11E-11 | 494 | 555 | No hit | No description |
SuperFamily | SSF46689 | 2.61E-17 | 495 | 561 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-29 | 497 | 560 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 511 | 550 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MGIAKTSPTT TTLLKTLHNN SMSQDYHHHH NQHQGGIFNF SNGFDRSDSP NLTTQQKQEH 60 QRVEMDEEPS AAGGRIPVYE SAGMLSEMFN FPGSSGGGRD LDHGQSFRSN RQLLEEQHQN 120 IPAMNATDSA TATAAAMQLF LMNPPPPQQP QSPSSTTTTR SHHNSSTLHM LLPNPSTNTT 180 THHQGYTNHM SMHQLPHQHH QQMTWQSSSS DHYHNNSQTE IGTVHVENSG GQGLSLSLSS 240 SLEAAAKAEE YRNIYYGANS SNASPHHQYN QFKTLLANSS QHQHQVLNQF RSSPAASSSS 300 IGAVNILRNS RYTTAAQELL EEFCSVGRGF LKKNKHGNSS NPNTIGGDGG GGSSSPSAGA 360 VKDHPPLSAS DRIEHQRRKV KLLTMLEEVD RRYNHYCEQM QMVVNSFDIV MGHGAALPYT 420 ALAQKAMSRH FRCLKDAVTD QLKQSCELLG DKDAAGISSS GLTKGETPRL RLLEQSLRQQ 480 RAFHQMGMME QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKHLLA RQTGLSRNQV 540 SNWFINARVR LWKPMVEEMY QQESKERERE REEELEENEE DQETKNSNND KSTKSNNDES 600 NFTAARTTSQ TPTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 500 | 558 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 500 | 558 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.16919s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF173816 | 0.0 | AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002869016.1 | 0.0 | BEL1-like homeodomain protein 2 isoform X1 | ||||
Refseq | XP_020874343.1 | 0.0 | BEL1-like homeodomain protein 2 isoform X1 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | D7MB33 | 0.0 | D7MB33_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000308 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 0.0 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.16919s0004.1.p |
Publications ? help Back to Top | |||
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