PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16901s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 399aa    MW: 46077 Da    PI: 7.6172
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16901s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016152175123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C+ Cg+ ++++ +Lk+H +  H
  Araha.16901s0008.1.p 152 YICGVCGRKCKTNLDLKKHFKQlH 175
                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.3E-572142IPR029060PIN domain-like
PROSITE profilePS5015710.575152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061671.97E-11166306No hitNo description
Gene3DG3DSA:3.40.50.10108.3E-5237302IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTKFP LRHQWRTKSC LKSASSSEID  60
MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK VAEKLGRVVE ISAYANRHAF  120
IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ  180
KKVNRMRSLK GKKRQKFKER YVSGNEKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  240
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDRDRALGRH  300
ADLWVPWSGV ENGEIGEKDL IPGKRPRFEE DAESEVGFSV GDELFSLSYD EDERAEMTVE  360
SDGFGRFNVS AFSEDEWVED EGDFALSDSD DDSDDELF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16901s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154780.0AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAY0395920.0AY039592.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankAY1294890.0AY129489.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865887.20.0uncharacterized protein LOC9301961
TrEMBLA0A178UA350.0A0A178UA35_ARATH; Uncharacterized protein
TrEMBLQ9FJ910.0Q9FJ91_ARATH; AT5g52010/MSG15_9
STRINGAT5G52010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein