PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.16901s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48306.6 Da PI: 7.5307 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.4e-07 | 117 | 138 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f+ G C+yGd+C++ H+ Araha.16901s0005.1.p 117 KVCNFWVD-GNCQYGDKCRYLHC 138 68**9*99.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.084 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-5 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 117 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-4 | 117 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 4.8E-45 | 136 | 437 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 3.5E-5 | 144 | 183 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 6.96E-45 | 144 | 440 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 0.0011 | 147 | 183 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.182 | 151 | 192 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 20.356 | 151 | 400 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 7.7E-7 | 170 | 184 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 170 | 184 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 6.6 | 223 | 260 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.01 | 267 | 304 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.035 | 271 | 304 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.678 | 274 | 313 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.7E-7 | 291 | 305 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.9E-4 | 307 | 344 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0048 | 309 | 343 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 7.7E-7 | 331 | 345 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 2.4 | 348 | 391 | IPR001680 | WD40 repeat |
SMART | SM00320 | 7.3 | 400 | 437 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MDFDLNGGNK RVFNRLGGGG GGGGGSTRTM APTDTRQKVC FHWRAGRCNR SPCPYLHREL 60 PGPGPGQGQG PGYTNKRVAE ESGFAGPSHR RGPGFNGNSN SSWGRFGGNR TVTKTEKVCN 120 FWVDGNCQYG DKCRYLHCWS KGESFSLLTQ LDGHEKLVSG IALPSGSDKL YTGSKDETLR 180 VWDCASGQCT GVLKLGGEVG CVLSEGPWLL VGMPNLVKAW NIETNADQSL NGPVGQVYSL 240 VVGTDLLFAG TQDGSILAWR YNAATNCFEP AASLTGHTLA VVTLYVGANR LYSGSMDKTI 300 KVWSLDNLQC IQTLTDHTSV VMSLICWDQF LLSCSLDNTV KIWAAVEGGN LEATYTHKEE 360 HGVLALCGVH DAEAKPVLLC SCNDNTLRLY DLPSLDSFIR FTERGKIFAK QEIRAIQIGP 420 GGIFFTGDGT GQVKVWKWCT EPTAALP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ovp_B | 4e-20 | 130 | 400 | 172 | 396 | F-box/WD repeat protein 7 |
2ovq_B | 4e-20 | 130 | 400 | 172 | 396 | F-box/WD repeat protein 7 |
2ovr_B | 4e-20 | 130 | 400 | 172 | 396 | F-box/WD repeat protein 7 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.16901s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ252064 | 0.0 | AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882984.1 | 0.0 | zinc finger CCCH domain-containing protein 63 | ||||
Swissprot | Q9FNZ1 | 0.0 | C3H63_ARATH; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | D7MRL1 | 0.0 | D7MRL1_ARALL; Uncharacterized protein | ||||
STRING | AT5G51980.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.2 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.16901s0005.1.p |