PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.16804s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 271aa    MW: 30104.2 Da    PI: 9.8991
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.16804s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3045.5e-93927015301
             GAGA_bind  15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvls 103
                           e++++l   +++++ms++aerda+++e n a++++k+a+a+rd+a+ qrdkal+er++a++e +++l al ++en+l+  l+      +
  Araha.16804s0008.1.p   9 EQHNALV--MNKKIMSILAERDAAVKEINEAVAATKEALAARDEALEQRDKALSERDNAIMETESALNALRYRENNLNYILSC--A-KR 92 
                           4556677..99****************************************************************96654422..1.22 PP

             GAGA_bind 104 gtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192
                           g ++                  + +++     pi++ ++e  +++ +k   r+k+ k+  ++k kk +e+ +++v++++  ++s+++++
  Araha.16804s0008.1.p  93 GGSHSC---------------VTDKSHLPAPSPISTIPPEPANTRLTK---RKKESKQVARSKGKKVGEDLNHQVASPG--KKSRKDWD 161
                           222222...............123445556788999999888888777...4455555566667777889999*****9..57****** PP

             GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
                           s d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S+yPLP+++++r++R+agrKmS+++f++lL++La+eG++ls 
  Araha.16804s0008.1.p 162 SYDVGLNLVTFDETTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSRVAGRKMSGSVFSRLLSRLAGEGHELSS 250
                           ***************************************************************************************** PP

             GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
                            vDLkd+WA+HGtn+++ti+
  Araha.16804s0008.1.p 251 HVDLKDYWARHGTNRYITIK 270
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1401270IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-898270IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVPQHQIKEQ HNALVMNKKI MSILAERDAA VKEINEAVAA TKEALAARDE ALEQRDKALS  60
ERDNAIMETE SALNALRYRE NNLNYILSCA KRGGSHSCVT DKSHLPAPSP ISTIPPEPAN  120
TRLTKRKKES KQVARSKGKK VGEDLNHQVA SPGKKSRKDW DSYDVGLNLV TFDETTMPVP  180
MCTCTGTARQ CYKWGNGGWQ SSCCTTTLSQ YPLPQMPNKR HSRVAGRKMS GSVFSRLLSR  240
LAGEGHELSS HVDLKDYWAR HGTNRYITIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.16804s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336030.0EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875421.10.0protein BASIC PENTACYSTEINE5 isoform X1
RefseqXP_020875422.10.0protein BASIC PENTACYSTEINE5 isoform X2
SwissprotF4JUI31e-171BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLV4M9X70.0V4M9X7_EUTSA; Uncharacterized protein
STRINGXP_006411681.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.11e-165basic pentacysteine 5