PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.16688s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28188.7 Da PI: 9.2534 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +++ +v+ +G g+W++I+++ g++R++k+c++rw +yl Araha.16688s0005.1.p 14 KGLWTEEEDAKILAYVAIHGVGNWSLIPKKAGLNRCGKSCRLRWTNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 69 | 110 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++++E+el++++++ G++ W++Iar+++ gRt++++k++w++ Araha.16688s0005.1.p 69 SFSPQEEELIIECHRIIGSR-WSSIARKLP-GRTDNDVKNHWNT 110 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.917 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-13 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.801 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.1E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.17E-11 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDSF SPQEEELIIE CHRIIGSRWS SIARKLPGRT DNDVKNHWNT KLKKKLMKMG 120 IDPVTHKPVS QVLSEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYNS 180 PMMFTNSASS EFQTTPFHFS SHPNHLLNGT TSSCSSSSSS ASITQPNQVP QTPVTNFYWS 240 DFLLSDPVPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.16688s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519591 | 0.0 | AY519591.1 Arabidopsis thaliana MYB transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ446711 | 0.0 | DQ446711.1 Arabidopsis thaliana clone pENTR221-At3g28470 myb family transcription factor (At3g28470) mRNA, complete cds. | |||
GenBank | DQ653114 | 0.0 | DQ653114.1 Arabidopsis thaliana clone 0000017443_0000012156 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877110.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 1e-163 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | D7LPU4 | 0.0 | D7LPU4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__614__AT3G28470.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 1e-164 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.16688s0005.1.p |
Publications ? help Back to Top | |||
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