PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1623s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 187aa    MW: 21769.7 Da    PI: 9.8362
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1623s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.8e-0781125147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +W +e +e ++ + k++G++ W++Ia  ++  + +kq+  + ++y
  Araha.1623s0006.1.p  81 RTKWNKETHEWFLIGLKRFGKD-WRKIAVLLN-SKNPKQVEIYAHNY 125
                          689*****************99.*********.*******9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.586152IPR017884SANT domain
SMARTSM007170.0089253IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-8457IPR009057Homeodomain-like
PROSITE profilePS5129410.33576130IPR017930Myb domain
SuperFamilySSF466894.93E-876127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-679130IPR009057Homeodomain-like
SMARTSM007171.1E-480128IPR001005SANT/Myb domain
PfamPF002491.7E-581125IPR001005SANT/Myb domain
CDDcd001674.36E-483126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAETSWTREE NEKFKNALVL FSAFLPTRFQ IIAENVQKSV ADVKEHYKEM VNDLLERGSS  60
RVAFPNKLTE AMAQSSYQAE RTKWNKETHE WFLIGLKRFG KDWRKIAVLL NSKNPKQVEI  120
YAHNYFNWQS SEENVMKRPR ANDITVANTE VNVMKRQRAN DMVDTNPQHE PIVMQICHHA  180
KASNSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1623s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884801.11e-132transcription factor DIVARICATA
TrEMBLD7L9131e-130D7L913_ARALL; Predicted protein
STRINGAl_scaffold_0003_10711e-131(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15934911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.14e-28MYB family protein