PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.16220s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | STAT | ||||||||
Protein Properties | Length: 669aa MW: 75724.6 Da PI: 5.4936 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 185.1 | 9e-58 | 221 | 340 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfei 89 ldvvl+na+gqpv+kdvevvasLlyad+ lv +++++aeapLL++ +Gvefss drp+kll+Gr+sfklkisqLssk+dnrLf+ikf i Araha.16220s0008.1.p 221 LDVVLSNAVGQPVHKDVEVVASLLYADT-LVEARMSEAEAPLLVRDEGVEFSSGDRPIKLLNGRSSFKLKISQLSSKSDNRLFWIKFGI 308 8**************************9.888899****************************************************** PP STAT 90 pklkkypfleavskpirCisrsrntrsssltk 121 ++ k+ypfl+avs+pirCis s ++r++s+t Araha.16220s0008.1.p 309 RNAKDYPFLQAVSNPIRCISISPDVRPLSVTP 340 ***************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.200 | 1.2E-6 | 24 | 146 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF49899 | 3.04E-8 | 29 | 166 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF13385 | 1.8E-6 | 30 | 147 | No hit | No description |
CDD | cd10338 | 4.25E-67 | 563 | 668 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 4.9E-8 | 570 | 621 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 2.42E-11 | 571 | 661 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.315 | 574 | 668 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MAGVSTIETE KYSLLEDFSV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV 60 SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TSSWTQVPSV STKSKFPLQK WVHVGCEVSR 120 NFMRLFIDGN IEGEQFVTSL LTKNTNPECP RKISLFSVGG DGYSVQGFIQ CAQVLPASDH 180 VEHHYMKDPP LLLSVNKSSS SGIKLDDDGV WQASCREIFS LDVVLSNAVG QPVHKDVEVV 240 ASLLYADTLV EARMSEAEAP LLVRDEGVEF SSGDRPIKLL NGRSSFKLKI SQLSSKSDNR 300 LFWIKFGIRN AKDYPFLQAV SNPIRCISIS PDVRPLSVTP KRLTNIDHLS STESPDVLHN 360 ASSVKRIRLG KESVSGSEES YQQCNSRPQT SRQFENGNGM RLHEEDNSST DSENSEMRYT 420 ISDSTIFRYC LGNIIDKSLL LKEITNNSSD DEVLEFANQV SLYSGCSHHS YQINMARELI 480 AEGTNAWILI SRNNQHVLWD NVVYEIEEHF MRISKCSSRS LTHQDFELLR RISGCYEYVT 540 QVNFEKMWCW LFPVAYSISR GLINGMWRSS SPKWIEGFIT KEEAEHSLQG QEPGTFILRF 600 PISRIWPHPD AGSLVVTYVG HDFALHHKQL KIDNICESSE RYMDAKPLQD MLLAEPELSR 660 LGRIIRSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.16220s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221532 | 0.0 | AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890440.1 | 0.0 | uncharacterized protein LOC9325260 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | D7KVC1 | 0.0 | D7KVC1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__2148__AT1G78540.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Araha.16220s0008.1.p |
Publications ? help Back to Top | |||
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