PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1612s0033.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 31632.3 Da    PI: 9.8361
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1612s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-18133187256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Araha.1612s0033.1.p 133 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTK 187
                          788899***********************************************98 PP
2HD-ZIP_I/II123.87.8e-40133222191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +
  Araha.1612s0033.1.p 133 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDSLTEENRRLQKEVSELR-A 221
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Araha.1612s0033.1.p 222 L 222
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.0E-211695IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.8E-19114187IPR009057Homeodomain-like
SuperFamilySSF466891.33E-18119190IPR009057Homeodomain-like
PROSITE profilePS5007117.232129189IPR001356Homeobox domain
SMARTSM003894.8E-15131193IPR001356Homeobox domain
PfamPF000467.7E-16133187IPR001356Homeobox domain
CDDcd000861.19E-13133190No hitNo description
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
SMARTSM003409.8E-27189232IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-11189223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009725Biological Processresponse to hormone
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPLTTSSSSS FQHMHNQNNN SHPQKIHHNS WTHLFQSSGI KRTTAERNSD AGSFLRGFNV  60
SRAPSAVAVV DLEEEAAVVS SPNSTVSSLS GNKRDLAVAR GGDENEAERA SCSRGGGSGG  120
SDDEDGGNGD GSRKKLRLSK EQALVLEETF KEHSTLNPKQ KLALAKQLNL RARQVEVWFQ  180
NRRARTKLKQ TEVDCEYLKR CCDSLTEENR RLQKEVSELR ALKLSPHLYM HMTPPTTLTM  240
CPSCERVSSS AATVTATPPP PTPTVVGRPS PQRLTPWTSI SLQQKSGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137SRKKLRL
2181189RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1612s0033.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412510.0AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881989.10.0homeobox-leucine zipper protein ATHB-4
SwissprotP929531e-168ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLD7LBT70.0D7LBT7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.4__2679__AT2G44910.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-129homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]