PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.16044s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 48914.6 Da PI: 6.0326 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 7 | 31 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f +tG C++ ++C+FaHg Araha.16044s0002.1.p 7 YKTKLCILFKKTGDCSR-PNCSFAHG 31 9****************.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.28E-6 | 4 | 36 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-12 | 4 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.657 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-7 | 7 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MSGSSMYKTK LCILFKKTGD CSRPNCSFAH GNAELRRPGE SSFTGRRHNM DSDLRDRLGR 60 QFSPERRPSL DRSGRRVQRF SGHDNPRPFE NRRDNEYREN RRFDERRNYA GGLKVGNRIE 120 DRAEDGRNKF QGYNNVLEEQ LKDVEMDVKM LTDDKQRLEA SVERKAHEVD ILSSRIHELE 180 TQLDREKEEC RRITSNTKKF VKEYNRFLRA QDDLKRSEAR LQKLGNQLST YLAGSEGNNR 240 DAGVDIVSDD ENNGRNLRTA CDPQNELQNT SSLSRKKHYV DQYTTKEPVE DGLIGRGEEK 300 KVEKEKKRPC WNMVSSKSYS EEESGAWNDE DTINKSSSKE DNWKRRRLSI GTSSTDKVIS 360 STSMAAREFD DDAESEEENP EAAKGSPLIS LPPPPPFRDA HVQGDEDDVN VDVMEQKKAN 420 DDDSV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 343 | 347 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.16044s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059899 | 0.0 | AY059899.1 Arabidopsis thaliana Unknown protein (At3g21810; MSD21.12) mRNA, complete cds. | |||
GenBank | AY128791 | 0.0 | AY128791.1 Arabidopsis thaliana unknown protein (At3g21810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887137.1 | 0.0 | zinc finger CCCH domain-containing protein 40 isoform X1 | ||||
Swissprot | Q93XW7 | 0.0 | C3H40_ARATH; Zinc finger CCCH domain-containing protein 40 | ||||
TrEMBL | D7L0X0 | 0.0 | D7L0X0_ARALL; Uncharacterized protein | ||||
STRING | scaffold_302603.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10069 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.16044s0002.1.p |