PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1589s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 30171.2 Da PI: 6.5148 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 4e-08 | 137 | 181 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq Araha.1589s0005.1.p 137 SIAARKRRRRITEKTQELAKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 181 6788*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-11 | 129 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-10 | 130 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.57 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 137 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-8 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MIIPETDMFF FQEQPQHQPL HHEKALSPSL FGFDHFYESF LPPQEIFLPS PKTQVFNESQ 60 DLDSFFHTPK HQNLINSSFH FNTHDPFSPS PTSNLLDSYI TEDANISEFR VPDFSSTFKV 120 GWTEQGDTKK RELSAQSIAA RKRRRRITEK TQELAKLIPG SQKHNTAEMF HAAAKYVKFL 180 QAQIEILQLK QSKMQTGDSL EVGREMQFLL ASQEIQEKLS TEEVCVVPRE MVQVLKAEEC 240 ILRNPKISRD INKLLSTNLM N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 145 | KKRELSAQSIAARKRRRR |
2 | 140 | 144 | RKRRR |
3 | 141 | 146 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1589s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488587 | 0.0 | AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002893639.2 | 1e-168 | transcription factor bHLH52 | ||||
Swissprot | Q9SA82 | 1e-162 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | D7KFM8 | 1e-167 | D7KFM8_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh1_pm.C_scaffold_1002485 | 1e-168 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-152 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1589s0005.1.p |
Publications ? help Back to Top | |||
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