PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1578s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 214aa    MW: 22807.5 Da    PI: 9.7419
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1578s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.87e-073861225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++G++C+F H
  Araha.1578s0007.1.p 38 KSKPCTKFFSTSGCPFGENCHFLH 61
                         7789******************** PP
2zf-CCCH35.41.8e-11180205127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt++C ++++ G C +GdrC+FaHg+
  Araha.1578s0007.1.p 180 FKTKICERYSK-GNCTFGDRCHFAHGE 205
                          69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-83861IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.34E-694150IPR004088K Homology domain, type 1
CDDcd001052.02E-4103145No hitNo description
Gene3DG3DSA:3.30.1370.102.1E-6106149IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-15174209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.727179206IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7179205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8179209IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-9180205IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDTRKRGRPE AGSFNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV AQMTNMGPPM PQVSRNMQGS GNGGRFSGRG ESGPGHICRQ TGAKLSIQDH  120
ERDPNLKNIE LEGTFEQINE ASAMVRELIG RLNSAAKKPP GGLGGGGMGS EGKPHPGSNF  180
KTKICERYSK GNCTFGDRCH FAHGEAELRR SIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1578s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273731e-161AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAY0857461e-161AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250321e-161BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884884.11e-139zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-130C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD7KZP61e-137D7KZP6_ARALL; KH domain-containing protein
STRINGfgenesh1_pm.C_scaffold_30010101e-138(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-111C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]