PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15627s0018.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YA
Protein Properties Length: 318aa    MW: 34892.6 Da    PI: 8.7267
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15627s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39.4e-32160216158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep++VNaKQ+++I++RRq+Rakle+++kl +++rkpylheSRh hAl+RpRgsgGrF
  Araha.15627s0018.1.p 160 NEPVFVNAKQFHAIMRRRQQRAKLEAQNKL-IRARKPYLHESRHVHALKRPRGSGGRF 216
                           59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.5E-37158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.018159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.3E-27161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-23162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-23193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKKDSFTSS AAHATPSFLN TSISWGLSTE SNVGGSAVMS LISFQDQDSS STLSTAQSST  60
HVATSGDDDP SRHISFSAHS DICKGFEETQ RKQFANNIKS GSSTAGIADI HFSPSKANFS  120
FHYADPHFGG VMPAAYLQQA TIWNPQMVSR VPLPFDLIEN EPVFVNAKQF HAIMRRRQQR  180
AKLEAQNKLI RARKPYLHES RHVHALKRPR GSGGRFLNTR KLQESTDPKQ DMPIQQQHAK  240
GNMSQFVAHQ LQTSKDRGCS TTSGSDITSA SDGVDLFGHS EFQISDHPSQ TNPTMYVHGQ  300
SNDMHGGGNT HHFSVHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-18161221363NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15627s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0330800.0BT033080.1 Arabidopsis thaliana unknown protein (At1g17590) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868336.10.0nuclear transcription factor Y subunit A-8
SwissprotQ9LNP60.0NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLD7KFH20.0D7KFH2_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
STRINGfgenesh2_kg.1__1922__AT1G17590.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-180nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]