PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.15608s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12482.1 Da PI: 10.616 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.3e-09 | 3 | 37 | 13 | 47 |
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + + k++G+g+W++I+r + +Rt+ q+ s+ qky Araha.15608s0005.1.p 3 LIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 37 55789*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.34E-5 | 1 | 38 | No hit | No description |
SuperFamily | SSF46689 | 5.11E-10 | 1 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.365 | 1 | 42 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.8E-11 | 2 | 41 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 3 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-7 | 5 | 37 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
LFLIGLKRYG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QNSVKKERKR SSIHDITTVD 60 TTLAMPGSTM DWTGQHESPV QAQPQQQIMS EFGQQLTTPG HFEDFGFRM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.15608s0005.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088362 | 1e-119 | AY088362.1 Arabidopsis thaliana clone 6170 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873168.1 | 3e-75 | transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 2e-28 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | D7LXM5 | 7e-74 | D7LXM5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_600421.1 | 1e-74 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-71 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.15608s0005.1.p |
Publications ? help Back to Top | |||
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