PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15560s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 268aa    MW: 30188.7 Da    PI: 6.5223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15560s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.8e-102975346
                          SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                           WTteE +++ +a + l  +    +W++Ia+ ++ g+t  +++ r+  
  Araha.15560s0002.1.p 29 TWTTEENKRFEKALAYLDDKdnleSWRKIAALIP-GKTVADVIKRYKE 75
                          5*****************99**************.**********975 PP
2Myb_DNA-binding49.31.1e-15147191347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+++++ + k++G+g+W+ Ia+ + k+Rt+ q+ s+ qky
  Araha.15560s0002.1.p 147 PWTEDEHLRFLMGLKKYGKGDWRNIAKSFVKTRTPTQVASHAQKY 191
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-51875IPR009057Homeodomain-like
PROSITE profilePS500906.5392277IPR017877Myb-like domain
SMARTSM007176.3E-52679IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-82983IPR009057Homeodomain-like
PfamPF002496.0E-82975IPR001005SANT/Myb domain
CDDcd001678.26E-72976No hitNo description
Gene3DG3DSA:1.10.10.603.9E-13139196IPR009057Homeodomain-like
PROSITE profilePS5129420.524140196IPR017930Myb domain
SuperFamilySSF466891.0E-16142195IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17143195IPR006447Myb domain, plants
SMARTSM007176.6E-12144194IPR001005SANT/Myb domain
PfamPF002497.9E-13147191IPR001005SANT/Myb domain
CDDcd001671.22E-10147192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSSSMMYRGV DMFSPENTNW IFQEVREATW TTEENKRFEK ALAYLDDKDN LESWRKIAAL  60
IPGKTVADVI KRYKELEHDV SDIEAGLIPI PGYGGDASSA ANSDYFFGLE NSSYGYDYVV  120
GGKRSSPAMS DCFRPPMPEK ERKKGVPWTE DEHLRFLMGL KKYGKGDWRN IAKSFVKTRT  180
PTQVASHAQK YFLRQLTDGK DKRRSSIHDI TTVNIPEADA TATAAATLSP TPANSFDDFI  240
QPNPHHSFAS ASESCYYNAF PQWSYIT*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15560s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195300.0AY519530.1 Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873022.10.0transcription factor DIVARICATA
SwissprotQ8S9H75e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7M7510.0D7M751_ARALL; Myb family transcription factor
STRINGfgenesh1_pg.C_scaffold_60000790.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-163MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]