PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15353s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 205aa    MW: 23505.5 Da    PI: 9.7546
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15353s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.42e-18124158135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           Cs+Cgt kTplWR+gp+g  tLCnaCG++yr  +l
  Araha.15353s0003.1.p 124 CSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRL 158
                           *******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-15118168IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.664118154IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-15120180No hitNo description
Gene3DG3DSA:3.30.50.106.7E-15122156IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.20E-19123180No hitNo description
PfamPF003202.5E-16124158IPR000679Zinc finger, GATA-type
PROSITE patternPS003440124149IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLGREDVFVD KEEDFGTAMQ QLPIPVNELD QLPMDLDSVY GFADEFREII EDSNLLLEDS  60
REFDDLNHNK FIDVSKPSRN SSALPTVTRG RFHAPKRSRN KRGRQKRLNF TSPADLFGIT  120
NKSCSHCGTR KTPLWREGPR GAGTLCNACG MRYRTGRLLP EYRPASSPDF KPNIHSNFHR  180
KVMEIRRERK SPPPNYRGID RDKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101RSRNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.15353s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386491e-106AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
GenBankCP0026861e-106CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875717.11e-142GATA transcription factor 14
SwissprotQ9M1U21e-107GAT14_ARATH; GATA transcription factor 14
TrEMBLD7LNM11e-140D7LNM1_ARALL; Predicted protein
STRINGAl_scaffold_0005_12701e-141(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-109GATA transcription factor 14