PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1505s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 305aa    MW: 34044.6 Da    PI: 6.078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1505s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-19155205255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +g+++AeIrdp   + + +r++lg+f ta eAa+a+++a+ +l+g
  Araha.1505s0004.1.p 155 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFETAIEAARAYDKAAFRLRG 205
                          7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-32154214IPR001471AP2/ERF domain
CDDcd000181.21E-30155213No hitNo description
PfamPF008472.0E-13155205IPR001471AP2/ERF domain
PROSITE profilePS5103224.105155213IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22155215IPR016177DNA-binding domain
SMARTSM003801.3E-35155219IPR001471AP2/ERF domain
PRINTSPR003672.5E-10156167IPR001471AP2/ERF domain
PRINTSPR003672.5E-10179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MATPNEVSAL FLIKKYLLDE LSPLPSATTN PWMNESDFSI FRSPAQDFTS FHQTGFEFSE  60
FETKPEIIDL VTPKPEISDF ELKPIIDSQV KSEIPLESND SFTFQSNPRV IIAQSNRKPP  120
LKIAPPNRTK WIQFATGNPK PELPVPVVAA EEKRHYRGVR MRPWGKFAAE IRDPNRRGTR  180
VWLGTFETAI EAARAYDKAA FRLRGSKAIL NFPLEVGKWN PSAEDGHGLN NKRKRDGEGE  240
EVTVVKKVPK TEESYAVSGG ENVESAASGL TAIDDWDMTE FLSMPLLSPL SPHPPFGHPQ  300
LTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-29154216466ATERF1
3gcc_A4e-29154216466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1505s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615460.0AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973430.0Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868059.10.0ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-170EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLD7MBY00.0D7MBY0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2560__AT4G17490.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-154ethylene responsive element binding factor 6