PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1504s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 226aa MW: 25488 Da PI: 7.7741 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 74.4 | 3.5e-23 | 23 | 81 | 17 | 70 |
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssa 70 R R+Rl+++ca ++F+L+ eLGf++d++t+ WLl++a+pai ++tg s++++ Araha.1504s0001.1.p 23 DRNNRIRLPVSCASQIFQLTHELGFKTDGETVGWLLRNAEPAIFAATGHsvnttSNDTS 81 3667*********************************************5543322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.023 | 12 | 68 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-19 | 23 | 83 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVSKNNKNNI ERKGRRTPRS SKDRNNRIRL PVSCASQIFQ LTHELGFKTD GETVGWLLRN 60 AEPAIFAATG HSVNTTSNDT SNEFIHSYMN IGTHNNYHYT DTSGVVYNNN YNDTSGVVYR 120 NYYNCTIDNS VHYADTSGVV SHRRENITGH HGLVFPAATM AEYGPATSFP TNDMRENGHL 180 MVNQNRSVML RPSVSQQQPQ PQPLFDEFYK VEMGNSEQTY VPSRD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1504s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875712.1 | 1e-122 | transcription factor TCP16 | ||||
TrEMBL | D7LNL1 | 1e-120 | D7LNL1_ARALL; Uncharacterized protein | ||||
STRING | scaffold_501359.1 | 1e-121 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16163 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 5e-32 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Araha.1504s0001.1.p |