PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14871s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 458aa    MW: 51568.4 Da    PI: 4.6813
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14871s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35131052103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d ++++++sws+++nsf+v+d+ efa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+
  Araha.14871s0001.1.p  13 FLSKTYDMVDDTSTDSIVSWSDTNNSFIVWDPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQ 92 
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i r+k +
  Araha.14871s0001.1.p  93 KHLLKTITRRKPA 105
                           *********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-39797IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-359102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-639102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
PAAILSSNAP PPFLSKTYDM VDDTSTDSIV SWSDTNNSFI VWDPPEFARD LLPKNFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKTIT RRKPAQGHGH GHPQSQNSNG  120
QNSSVSACVE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQSTDNQLQT MVQRLQGMEN  180
RQQQLMSFLA KAVQSPHFLS QFLQQQNQQN ESSRRISDTN KKRRFKRDGI VRNNDSASPD  240
GQIVKYQPPM HEQAKAMFKQ LMKMEPYKTG DDGFLLGNGT STTEGTEMET SSNHASGITL  300
QEMPTASEIQ SSSPSIGTTP ENVSAVPEAT ENCIPSPDDL TLPEFTHMLP ENNAEKPPEN  360
FMEPNMGGSS PLLDPDLLIN FDIDDFPMDP DMGPVDYKLL EDLLMSSPVP DNMDFTPVDN  420
ETEQKQNGWD KTKQMDNLTQ QMGLLSPETI DLSRQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-25110218129Heat shock factor protein 1
5d5v_B3e-25110218129Heat shock factor protein 1
5d5v_D3e-25110218129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219226NKKRRFKR
2220225KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14871s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867922.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLD7KHI80.0D7KHI8_ARALL; ATHSFA1D
STRINGfgenesh2_kg.1__3374__AT1G32330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]