PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.14454s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 719aa    MW: 81162.8 Da    PI: 6.8295
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.14454s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.13.7e-1143447131374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++c +av+++d ++a +lL++++ +++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P
  Araha.14454s0001.1.p 344 LRSLLIHCSQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCP 429
                           689***************************************************************9999...999************* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k+s++++N++I + v +++rvH+iDf+i +G+QWp+L++ ++    g+p++RiTg++ p++g   ++++eetg+rLa +A+++gv+f
  Araha.14454s0001.1.p 430 FRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSR--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVSF 516
                           *******************************************97..899*************9************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e+++ +ak++++++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s
  Araha.14454s0001.1.p 517 EYKA-IAKKWDAVQLEDLDIDRDEITVVNCLYRAKNLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFS 604
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           ++fd+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + +++++ + + ++++
  Araha.14454s0001.1.p 605 SIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQD 693
                           ********************************************************************************888****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                           + +l++gWk+r+++++S+W+
  Araha.14454s0001.1.p 694 NRWLLQGWKGRTVMALSVWK 713
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.73318693IPR005202Transcription factor GRAS
PfamPF035141.3E-111344713IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MITEPSLTGI SGTVNRNRLS GLPDQSASHS FTPVTLYDGF NYNLSSDHRN TVVAAPPQNS  60
VFIREVEEEE DPADDFDFSD AVLGYISQML NEEDMDDKVC MLQESLDLET AERSLYEAIG  120
KKYPPSPERN LAFAERNGEN LDRVVPGNYT GGDCIGFENG GIKPLSGGFT LDFRNPSSVL  180
SVPQSNGLVT IYGDGIDESS KRRFYPDSNR ESHQSVWLFR REIEEANRFL PEENIVNFRE  240
ENYVNKGRKN SSRDEICVEE ERSSKLPAVF GEDILRSDVV DKILVHVPGE ESMKEFDALR  300
EVLKKGVEKK KASVAQGGKR RARGRGRGRG GGGGQNGKKE VVDLRSLLIH CSQAVAADDR  360
RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG SQIYKGIVSK PRSAAAVLKA  420
HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSRYGSPKV  480
RITGIEFPQP GFRPAQRVEE TGQRLAAYAK QFGVSFEYKA IAKKWDAVQL EDLDIDRDEI  540
TVVNCLYRAK NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL  600
FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR  660
SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG WKGRTVMALS VWKPESKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4135071625382Protein SCARECROW
5b3h_A8e-4135071624381Protein SCARECROW
5b3h_D8e-4135071624381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320329RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.14454s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181301.10.0GRAS family transcription factor
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A178VXE60.0A0A178VXE6_ARATH; Uncharacterized protein
STRINGAT2G37650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein