PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.14384s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 231aa MW: 26696.3 Da PI: 5.5056 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 104.2 | 8.4e-33 | 58 | 154 | 2 | 99 |
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l++fw+++ + ++ +lPlarikk++k+d++vkm+ +++ vll+kac++fi e+tlr+w h+++++r+t++ +di++a+++++i++ Araha.14384s0001.1.p 58 LEKFWAHHN-SIGLHEKLDLPLARIKKVMKSDPQVKMVNSDSHVLLAKACDIFIEEVTLRAWRHTQSCSRNTIQSCDIFKALKESVIYE 145 678887653.344456789********************************************************************** PP NF-YC 91 flvdivprd 99 l+d v Araha.14384s0001.1.p 146 ELTDLVSFG 154 ****99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-20 | 60 | 141 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.3E-24 | 73 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-17 | 76 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVRPIVATSS VNPNPTMEES FVMMEPSEHY VNSVRQIHDQ SRFVCPTDQE RHLLNQDLEK 60 FWAHHNSIGL HEKLDLPLAR IKKVMKSDPQ VKMVNSDSHV LLAKACDIFI EEVTLRAWRH 120 TQSCSRNTIQ SCDIFKALKE SVIYEELTDL VSFGQHSVTH QGVPQDVVQQ QLFPSANVNV 180 PEMKDPIDID KIQQQCLYYR TTEHFIDIGE FELDPKYQVV FFEPLYAQQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 1e-22 | 76 | 151 | 42 | 117 | HapE |
4g92_C | 1e-22 | 76 | 151 | 42 | 117 | HapE |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.14384s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028606 | 2e-34 | AB028606.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17. | |||
GenBank | CP002688 | 2e-34 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872129.1 | 1e-110 | nuclear transcription factor Y subunit C-10 isoform X1 | ||||
TrEMBL | D7MK46 | 1e-147 | D7MK46_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_7003362 | 1e-147 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19106 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38140.1 | 3e-39 | nuclear factor Y, subunit C12 |
Link Out ? help Back to Top | |
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Phytozome | Araha.14384s0001.1.p |