PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13863s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 232aa    MW: 26237.5 Da    PI: 6.6364
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13863s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-081682012154
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           k +yp++e++++L +++gL+ +q+ +WF N+R +
  Araha.13863s0006.1.p 168 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 201
                           469*****************************87 PP
2ELK29.91.3e-10122143122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELKh+L+++Y+++++++++E++
  Araha.13863s0006.1.p 122 ELKHELKQGYKEKIVDIREEIL 143
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.5E-291368IPR005541KNOX2
PfamPF037911.1E-211767IPR005541KNOX2
SMARTSM011886.1E-4122143IPR005539ELK domain
PROSITE profilePS512139.969122142IPR005539ELK domain
PfamPF037894.6E-7122143IPR005539ELK domain
PROSITE profilePS5007111.726142205IPR001356Homeobox domain
SMARTSM003892.4E-11144209IPR001356Homeobox domain
SuperFamilySSF466891.8E-16144208IPR009057Homeodomain-like
CDDcd000865.07E-12145206No hitNo description
Gene3DG3DSA:1.10.10.601.3E-25149206IPR009057Homeodomain-like
PfamPF059205.0E-18162201IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE  60
QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANLFDGSLDV LGFGPLVPTE SERSLMERVR  120
QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL  180
VQETGLQLKQ INNWFINQRK RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13145209872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13863s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860910.0AY086091.1 Arabidopsis thaliana clone 21240 mRNA, complete sequence.
GenBankAY1207620.0AY120762.1 Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA, complete cds.
GenBankBT0001390.0BT000139.1 Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA, complete cds.
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872145.11e-171homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-171KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLD7M3V61e-170D7M3V6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2508__AT5G25220.11e-170(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-173KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]