PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.13695s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 364aa    MW: 39806.2 Da    PI: 8.1675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.13695s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042151173123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C+++F++   L  H  +H
  Araha.13695s0003.1.p 151 YQCKTCDRTFPSFQALGGHRASH 173
                           9***********99999998887 PP
2zf-C2H213.10.00029230252123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  Araha.13695s0003.1.p 230 HECGICGAEFTSGQALGGHMRRH 252
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.72E-9150173No hitNo description
PfamPF139122.1E-12150175IPR007087Zinc finger, C2H2
SMARTSM003550.028151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471151178IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576674.72E-9225252No hitNo description
Gene3DG3DSA:3.30.160.607.3E-4228254IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11229254IPR007087Zinc finger, C2H2
SMARTSM003550.047230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93230254IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEAFEEATKE HSLILKGKRT KRQRPQSPIP FSISPPIVSS PERNMEEEFI DLDSKDNALG  60
NDEGNHKKDG VITSSSSSAS WSSHNNPTLK AAEDEEDQDI ANCLILLAQG HSLPNNNHHV  120
TNNNNAYRFT SRRFLETSSS NSGGKAGYYV YQCKTCDRTF PSFQALGGHR ASHKKPKAAS  180
FYSNLDLKKN IYANDAVSLV HTTTTVYNNN KNNNSRSLVV YGKASNNKVH ECGICGAEFT  240
SGQALGGHMR RHRGAVVVPA AVAPTVTVAT AAANTELSLS SMSFDQISDG QDHLVMPAKK  300
KARKTAVSLD LDLNLPAPED ENRVNGFSFA SKQNHEQEHQ PKKQREEPKS LVLSAPTLVD  360
CHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.13695s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_196059.10.0C2H2-type zinc finger family protein
TrEMBLQ84K310.0Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGAT5G04390.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.10.0C2H2 family protein