PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.1306s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 419aa    MW: 48990 Da    PI: 6.4738
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.1306s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-18209255148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd  l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
  Araha.1306s0007.1.p 209 KGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 255
                          799*****************************.*************97 PP
2Myb_DNA-binding52.11.5e-16261303145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +  W++eEd  l++ +k+ G++ W+ Ia++++ gRt++++k++w+
  Araha.1306s0007.1.p 261 KETWSEEEDRVLIEFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 303
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.225204259IPR017930Myb domain
SuperFamilySSF466891.37E-32207302IPR009057Homeodomain-like
SMARTSM007172.8E-17208257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-27210260IPR009057Homeodomain-like
PfamPF139216.1E-20212269No hitNo description
CDDcd001672.51E-15212255No hitNo description
PROSITE profilePS5129421.16260310IPR017930Myb domain
SMARTSM007174.8E-16260308IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-22261308IPR009057Homeodomain-like
CDDcd001675.11E-12263306No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MENFVDENAF VPLNQNIFTC DQEHMKEEDF PFEVVDQSKP TSFLQDFHHL DHDHQFDHHH  60
HGSSSSHPLL GLQATNAPLE HCSYQENMVE FYETKPHLMN HHFQAAENSY FTRNNHHQEI  120
NMVDEHDPMD LDQNNMMMMR MIPFDYPPTE TFKPVMNFVM PDEISCVSAD NDCYRATSFN  180
KTKPFLTRKL SSSSSSSSWK ENKKSTLVKG QWTAEEDRVL IQLVEKYGLR KWSHIAQVLP  240
GRIGKQCRER WHNHLRPDIK KETWSEEEDR VLIEFHKEIG NKWAEIAKRL PGRTENSIKN  300
HWNATKRRQF SKRKCRSKYP RPSLLQDYIK SLNMGVLSAS SVPARGRRRE SNKKKDVVVA  360
VEEKKKEEEI YGQDRIVPEC VFTDDFGFNE KLLEEGCSID SLLDDIPQPD IDAFVHGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-452073092104C-Myb DNA-Binding Domain
1msf_C3e-452073092104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.1306s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1980820.0DQ198082.1 Arabidopsis thaliana myb family transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870023.10.0transcription factor MYB98
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLD7M9F30.0D7M9F3_ARALL; Myb family transcription factor
STRINGscaffold_702543.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]